Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1932 206 3e-48 seq1058 132 6e-26 >seq1932 Length=74184 Score = 206 bits (228), Expect = 3e-48 Identities = 1147/1820 (63%), Gaps = 63/1820 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| ||||||||||| || |||||||| || | |||||| || Sbjct 59975 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATGCATGCTGGTG 59916 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | ||| || | |||| || ||| | ||||| || ||||||||| Sbjct 59915 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAG 59856 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 113773 |||||||| || ||||| | | || | | || | |||||||| || || Sbjct 59855 GCACCACGATCGGCAGCCATCTGGA---CAACGGTGCGCTGGGAGATTTCCCAGACGGTC 59799 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||| || ||| | || | || || | ||| || || | ||| ||| | | Sbjct 59798 TTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGAACCATTCTC- 59740 Query 113834 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 113890 | | |||| | | |||||| | | ||||| | || || | |||||||| Sbjct 59739 --GGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACGAGATCCTTA 59682 Query 113891 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 113950 | || |||||||| ||||| || || || || | | | ||||| ||| Sbjct 59681 AGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTG 59622 Query 113951 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGC 114010 | ||||| ||||| |||||||| ||||| |||||||| |||| |||||||| || ||| Sbjct 59621 GAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGC 59562 Query 114011 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCG 114070 ||||| || | || || ||||| || | ||| | |||| | || | ||||| || | | Sbjct 59561 ATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAG 59502 Query 114071 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 114130 |||||||| || | | || | | |||||| || |||| |||||||| ||| Sbjct 59501 TCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGG 59442 Query 114131 GAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATT---CGGAG 114187 ||| || || ||||| | || ||| | ||||| || |||| || |||| Sbjct 59441 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGAC 59382 Query 114188 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 114247 | | | || || ||||| || || ||||| ||||| || | | ||| Sbjct 59381 ATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCGAGCC 59325 Query 114248 TCGTCGGAATC-AAACGC--GAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 114304 || || || ||| || | || || || || |||| || ||||| |||||| Sbjct 59324 TCAGGAGACTCGAAAGGCATGCGTAGGGC---AAGGAAGGCATCAGCAAGACCCTGGACA 59268 Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAA 114361 || ||||| || || || || | ||| || || ||||| ||| ||||| || Sbjct 59267 CCAAGGCCGATGGGACGGTGACGCATGTTGCTGTTGCGAGC---CTCAGGAACGGGGTAG 59211 Query 114362 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 114421 || ||| || | | | || || || | || |||| |||| || |||||| Sbjct 59210 TGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGC 59151 Query 114422 TTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT---ACTTAGGAAGGGCGATTGAC 114478 || | | |||| | | | ||| | | | || | |||| ||||| | || Sbjct 59150 TTCTGGAAATCGTA---GACACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAG 59094 Query 114479 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 114538 |||| || || |||| |||||| | |||||| || || || || || | | Sbjct 59093 GCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGA 59034 Query 114539 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 114598 || || || ||||| || | |||||| || || ||| ||| || |||||| Sbjct 59033 TTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTG 58974 Query 114599 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATC 114657 ||||||||| | || | || ||||| || || | || ||| || || | ||| | | || Sbjct 58973 TAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTC 58914 Query 114658 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTGTAGAG 114711 | | || | ||| ||| || |||| | || ||||||||| ||| | Sbjct 58913 TGGGCCTTGA----TGGTCTTG---CGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAA 58861 Query 114712 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAG 114771 ||| || ||||| || || | || | || || || || | || || | ||| Sbjct 58860 GGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAG 58801 Query 114772 AGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGA 114831 | ||||| | || ||| || | ||||||||| || || ||||||||||| || Sbjct 58800 GGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAG 58741 Query 114832 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 114891 ||| || || ||| || | || || | || || || ||||| |||| || || Sbjct 58740 GAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTC 58681 Query 114892 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA----- 114946 | || ||| |||||||| || || ||||| | |||| | || | |||| Sbjct 58680 AAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACC---AGGACGCTTGTT 58624 Query 114947 -CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005 ||| |||||| || || | || ||| || || || |||||||| ||||||| ||| Sbjct 58623 GCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACC 58564 Query 115006 ATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTG 115065 | ||| ||| || || || |||| || | |||| | || | ||| || Sbjct 58563 GTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTT 58504 Query 115066 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 115125 | |||||| || || ||| ||| ||||| ||||| | |||| || ||||||| Sbjct 58503 GAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGAT 58444 Query 115126 CCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGG 115185 || || || ||||| |||| | ||| |||||||| |||| || | || Sbjct 58443 ACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGG 58384 Query 115186 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTA 115243 ||||| ||||||||||| || || | |||||| ||| | | |||| |||||| Sbjct 58383 GGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAGG 58326 Query 115244 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 115303 | ||||||||| | |||| || || || || || |||| | ||| ||||| Sbjct 58325 TTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACACGCATG 58266 Query 115304 AACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCC 115363 | ||||| || ||| | || | | || |||||| || | ||||| ||||| Sbjct 58265 ATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTCC 58206 Query 115364 AAGGTCTTGAGACCAAAATA 115383 | ||| |||| ||| || || Sbjct 58205 AGGGTTTTGAAACCGAAGTA 58186 >seq1058 Length=49244 Score = 132 bits (146), Expect = 6e-26 Identities = 307/459 (67%), Gaps = 18/459 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| |||||||| |||||||| ||||| ||| | | | ||| |||||||| Sbjct 16080 GTAGTCGGCAACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 16139 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCC-CAATCTGTTTGAG 125871 || ||||| ||||| || || | | | |||| || ||| | | Sbjct 16140 GAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAACC------AA 16193 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 |||||| || | ||| |||| ||||||| |||| | |||||||| |||| ||| Sbjct 16194 GAGACGGTCGGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAG 16253 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 || || || || || | |||| ||| |||||| | ||||| || | || Sbjct 16254 AGCGCAAGGCAGAGCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAAT 16313 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGC 126048 | | | |||| | | | ||| | | || | || | ||||| || ||| Sbjct 16314 GTCCTCAATGACCTGCTTGCTAGGGCGGTGCTTGAGGTGAGAGTACAAGAGG--CA-GGC 16370 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 ||| || |||||||||||| |||||||||||||| || || |||||| ||| || || Sbjct 16371 AAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGG 16430 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 ||||||||| |||||||| | |||||| || | || | ||| ||||||||| || Sbjct 16431 CATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACC 16490 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 ||| ||| ||||| |||| || |||| || ||||| Sbjct 16491 CTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAGGA 16529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597332871830080