Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 360 2e-94
>seq1932
Length=74184
Score = 360 bits (398), Expect = 2e-94
Identities = 1099/1676 (66%), Gaps = 46/1676 (3%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||| | |||||||| ||||||| || ||||| || ||| | || |||
Sbjct 58177 AACTACCAATACTTCGGTTTCAAAACCCTGGAGAGATCATACCTGCTGAAGCTCGACGGC 58236
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || ||||| ||||||| || || | ||||| ||||| |||| || || ||
Sbjct 58237 AAGATTGCCGAGAGACCGCAGCACATGATCATGCGTGTCGCAGTCGGCATCTGGGGTGAC 58296
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| | | || | | | | || |||| |||| | ||| |||
Sbjct 58297 GATGTTGAGCGCGTCATTGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCC 58356
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCG--GTGCCACAGATGTCTTCGTGTTTCCTGA 93952
|||| || || |||||||| || ||||| |||||| | ||||||| || |||||
Sbjct 58357 TCCCCCACACTCTTCAACGCCGGTACCCCTCAGTGCCA--GCTGTCTTCATGCTTCCTCG 58414
Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011
| ||| | |||| |||||||| || || | ||||| ||||||| ||| || |
Sbjct 58415 TCGAC-ATGAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATG 58473
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069
||||| || || || || || || ||| | |||| |||| ||||||| || |
Sbjct 58474 ATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCCCAC--CGTATCCGTGCCACTGGCT 58531
Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129
|||| || ||| ||||| |||||||| ||||| || | || ||||| || |||||||
Sbjct 58532 CCTATATTGCCGGCACCAACGGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCA 58591
Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189
||||| | || |||||||| ||||||||||| | | | ||| | ||||| |||
Sbjct 58592 ACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCT 58651
Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249
| || ||||| |||||||| || || | ||||| ||| |||| |||||||||||||
Sbjct 58652 ACCTTGAGCCTTGGCACGCCGATGTCTTTGAGTTCATGGACTTGCGCAAGAACCACGGCA 58711
Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309
| || || | || | ||||| ||| ||| |||||| | || || || || ||||
Sbjct 58712 AGGAGGAGGTCCGTGCTCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGA 58771
Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369
| | |||||||| ||| ||| |||| || | |||||||| || || ||||| |||
Sbjct 58772 AGAGAGTCGAGAAGAACGCCGAATGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGG 58831
Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428
| ||| | || | || || | |||||| | |||| | ||| | ||||||
Sbjct 58832 CTGACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACG-AGCGCGAAGGCAAG 58890
Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488
| | ||| || | || |||||| ||| | ||| | || | ||| |||
Sbjct 58891 GGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAG 58950
Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548
|| || | |||| ||| | | ||||||| | | ||| |||| ||||||| || ||
Sbjct 58951 ACCGGCAACCCCTTCATGCTTTACAAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAAC 59010
Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608
||||| ||| ||||| ||||| ||||| ||||| | ||||| | || ||
Sbjct 59011 CTCGGAACCATCCGCAGCTCCAATCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGAT 59070
Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668
||| ||||||| || ||| ||| ||| | |||| | || ||||| || ||||
Sbjct 59071 GAGGTTGCTGTATGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGT------TGACTAC 59124
Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCT 94726
| | | | || | |||| | || ||||| | || | ||| | |||
Sbjct 59125 A--ACGAGGGTGTC-TACGATTTCCAGAAGCTTCACGAGGTCAC--TCAGGTCGTTGTCC 59179
Query 94727 TGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786
|||||||||| | | || || ||| ||||||||| || ||||| ||| |
Sbjct 59180 GCAACCTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCTGAGGCTCGCAACAGCA 59239
Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846
|| || || || ||||||||| | || ||||||||| | || || || | |
Sbjct 59240 ACATGCGTCACCGTCCCATCGGCCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCTTGCCC 59299
Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906
| || |||| | ||| ||| || || | | | || ||| || ||||| | ||
Sbjct 59300 TACGCATGCCTTTCGAGTCTCCTGAGGCTCGCGATCTCAACAAGAAGATTTTCGAGACCA 59359
Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG---CCAC 94963
| || ||| || ||| ||||| || ||||||| ||| || ||| | ||
Sbjct 59360 TCTACCACGCTGCTCTGACCATGTCCGTTCAACTGGCCAG---GGA-GGAGGGTACCTAC 59415
Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023
| | ||| | || || || | ||||| || |||||| |||| | ||| ||
Sbjct 59416 TCCA--CGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATG 59473
Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGG 95081
| |||||||| | || | |||||||| |||| | | || || | | |||||||
Sbjct 59474 TCAAGCCCTCTGACCTCTGGGACTGGGACTCTCTGAAGGAGCAGA--TCAAGGAACACGG 59531
Query 95082 TGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGG 95141
||| ||| |||||||| || |||||||| || |||||||| | |||||| | ||
Sbjct 59532 TGTTCGCAACAGTCTGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGG 59591
Query 95142 CAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGG 95201
||||||||||| ||||| |||| ||| |||||| | ||| | | || || || |||||
Sbjct 59592 CAACAACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGCCGTGTTCTTGCCGG 59651
Query 95202 GGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGG- 95259
|| |||| || ||||| || || ||| || | || | |||| | |||
Sbjct 59652 CGAGTTCCAGGTTGTCAACCCCTGGCTGCTTAAGGATCTCGTCGAC-ATGGGCTTATGGT 59710
Query 95260 --GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317
| || || | ||||||| | | || || || ||||| |||||||||||
Sbjct 59711 CCGATGCCA---TGAAGAACCGTATCATTGCCGAGAATGGTTCCGTTCAGAACATCCCCA 59767
Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373
| || || | || ||||||| || ||||||||||| ||||| ||| | ||||||
Sbjct 59768 ACATTCCCGCCGAGGTCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGC 59823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494706033104960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |