Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1932 360 2e-94 >seq1932 Length=74184 Score = 360 bits (398), Expect = 2e-94 Identities = 1099/1676 (66%), Gaps = 46/1676 (3%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||||| ||||||| || ||||| || ||| | || ||| Sbjct 58177 AACTACCAATACTTCGGTTTCAAAACCCTGGAGAGATCATACCTGCTGAAGCTCGACGGC 58236 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| ||||||| || || | ||||| ||||| |||| || || || Sbjct 58237 AAGATTGCCGAGAGACCGCAGCACATGATCATGCGTGTCGCAGTCGGCATCTGGGGTGAC 58296 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | || | | | | || |||| |||| | ||| ||| Sbjct 58297 GATGTTGAGCGCGTCATTGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCC 58356 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCG--GTGCCACAGATGTCTTCGTGTTTCCTGA 93952 |||| || || |||||||| || ||||| |||||| | ||||||| || ||||| Sbjct 58357 TCCCCCACACTCTTCAACGCCGGTACCCCTCAGTGCCA--GCTGTCTTCATGCTTCCTCG 58414 Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| | |||| |||||||| || || | ||||| ||||||| ||| || | Sbjct 58415 TCGAC-ATGAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATG 58473 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTT 94069 ||||| || || || || || || ||| | |||| |||| ||||||| || | Sbjct 58474 ATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCCCAC--CGTATCCGTGCCACTGGCT 58531 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 |||| || ||| ||||| |||||||| ||||| || | || ||||| || ||||||| Sbjct 58532 CCTATATTGCCGGCACCAACGGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCA 58591 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| | || |||||||| ||||||||||| | | | ||| | ||||| ||| Sbjct 58592 ACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTCGCCATCT 58651 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || ||||| |||||||| || || | ||||| ||| |||| ||||||||||||| Sbjct 58652 ACCTTGAGCCTTGGCACGCCGATGTCTTTGAGTTCATGGACTTGCGCAAGAACCACGGCA 58711 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || || | || | ||||| ||| ||| |||||| | || || || || |||| Sbjct 58712 AGGAGGAGGTCCGTGCTCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGA 58771 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | | |||||||| ||| ||| |||| || | |||||||| || || ||||| ||| Sbjct 58772 AGAGAGTCGAGAAGAACGCCGAATGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGG 58831 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAG 94428 | ||| | || | || || | |||||| | |||| | ||| | |||||| Sbjct 58832 CTGACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACG-AGCGCGAAGGCAAG 58890 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | ||| || | || |||||| ||| | ||| | || | ||| ||| Sbjct 58891 GGTCGCAAGACCATCAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAG 58950 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || | |||| ||| | | ||||||| | | ||| |||| ||||||| || || Sbjct 58951 ACCGGCAACCCCTTCATGCTTTACAAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAAC 59010 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 ||||| ||| ||||| ||||| ||||| ||||| | ||||| | || || Sbjct 59011 CTCGGAACCATCCGCAGCTCCAATCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGAT 59070 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| ||||||| || ||| ||| ||| | |||| | || ||||| || |||| Sbjct 59071 GAGGTTGCTGTATGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGT------TGACTAC 59124 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCT 94726 | | | | || | |||| | || ||||| | || | ||| | ||| Sbjct 59125 A--ACGAGGGTGTC-TACGATTTCCAGAAGCTTCACGAGGTCAC--TCAGGTCGTTGTCC 59179 Query 94727 TGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 |||||||||| | | || || ||| ||||||||| || ||||| ||| | Sbjct 59180 GCAACCTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCTGAGGCTCGCAACAGCA 59239 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || || || || ||||||||| | || ||||||||| | || || || | | Sbjct 59240 ACATGCGTCACCGTCCCATCGGCCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCTTGCCC 59299 Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 | || |||| | ||| ||| || || | | | || ||| || ||||| | || Sbjct 59300 TACGCATGCCTTTCGAGTCTCCTGAGGCTCGCGATCTCAACAAGAAGATTTTCGAGACCA 59359 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG---CCAC 94963 | || ||| || ||| ||||| || ||||||| ||| || ||| | || Sbjct 59360 TCTACCACGCTGCTCTGACCATGTCCGTTCAACTGGCCAG---GGA-GGAGGGTACCTAC 59415 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTG 95023 | | ||| | || || || | ||||| || |||||| |||| | ||| || Sbjct 59416 TCCA--CGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATG 59473 Query 95024 TGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGG 95081 | |||||||| | || | |||||||| |||| | | || || | | ||||||| Sbjct 59474 TCAAGCCCTCTGACCTCTGGGACTGGGACTCTCTGAAGGAGCAGA--TCAAGGAACACGG 59531 Query 95082 TGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGG 95141 ||| ||| |||||||| || |||||||| || |||||||| | |||||| | || Sbjct 59532 TGTTCGCAACAGTCTGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGG 59591 Query 95142 CAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGG 95201 ||||||||||| ||||| |||| ||| |||||| | ||| | | || || || ||||| Sbjct 59592 CAACAACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGCCGTGTTCTTGCCGG 59651 Query 95202 GGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGG- 95259 || |||| || ||||| || || ||| || | || | |||| | ||| Sbjct 59652 CGAGTTCCAGGTTGTCAACCCCTGGCTGCTTAAGGATCTCGTCGAC-ATGGGCTTATGGT 59710 Query 95260 --GGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317 | || || | ||||||| | | || || || ||||| ||||||||||| Sbjct 59711 CCGATGCCA---TGAAGAACCGTATCATTGCCGAGAATGGTTCCGTTCAGAACATCCCCA 59767 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 | || || | || ||||||| || ||||||||||| ||||| ||| | |||||| Sbjct 59768 ACATTCCCGCCGAGGTCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGC 59823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494706033104960