Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1058 132 5e-26 seq791 113 4e-20 seq1741 89.7 5e-13 >seq1058 Length=49244 Score = 132 bits (146), Expect = 5e-26 Identities = 344/513 (67%), Gaps = 25/513 (5%) Strand=Plus/Minus Query 52336 TTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGCCACGCTGGCC 52394 ||||||| |||||| | ||||| ||||||||||| | || ||| | | | | | ||| Sbjct 16579 TTCGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGA-CGATAGCTCTTCCTTCGCC 16521 Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 |||| |||| ||||||||| |||||||| | || || ||| ||| ||| || Sbjct 16520 CAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCC 16461 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||| | | || | | || | |||||||| ||||| ||| ||||||| | || Sbjct 16460 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATC 16401 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACT---ACAAGACGCGC 52568 || || || || || || ||||| |||||||| |||||| |||| || | || | Sbjct 16400 TCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCAC 16341 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAG--CATGTTCAAGGAGGCGGTGGCTA 52626 | || | || | | || || |||| ||| || || || || | Sbjct 16340 -CGCCCTAGCAA--GCA---GGTCA-----TTGAGGACATTATCGTTGATGCCGTCAAGA 16292 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 | || ||||||| | || | || ||||| || || || ||||||||| | | | Sbjct 16291 TTGAGCAGGAGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACT 16232 Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGCAGCCA 52745 ||| ||||||||||||| || || || ||||| ||||| |||| |||| | | Sbjct 16231 TGATGAAGCAGTACATCGAGTTCGTTGCCGACCGTCTCTTGGT--TGCTCTTGGCAACGA 16174 Query 52746 -AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804 ||| || ||| || ||| || ||||| || ||| | ||||| || |||| ||||| Sbjct 16173 CAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGCGGCAA 16114 Query 52805 GACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||| || |||||||| || | ||| || Sbjct 16113 GACCAACTTCTTTGAGAAGCGCGTTGCCGACTA 16081 >seq791 Length=44334 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 42440 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 42499 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || |||| |||| || ||||| ||||| || || Sbjct 42500 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 42559 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | |||||||| ||||||||| Sbjct 42560 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGACGACTCCAC 42618 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || || ||||| || || || || ||||||||| Sbjct 42619 CTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 42667 >seq1741 Length=26822 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | | || ||||| || ||||||||||||||| Sbjct 17197 CCGCCACGAAGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 17138 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | |||| |||||||| ||||| ||||| Sbjct 17137 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGA 17078 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || || || ||| || || | | || | ||||| | ||||| ||| Sbjct 17077 ATACCCTCCTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACC 17018 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || || || |||||||| Sbjct 17017 TCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 16971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496245179694720