Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1058 132 5e-26
seq791 113 4e-20
seq1741 89.7 5e-13
>seq1058
Length=49244
Score = 132 bits (146), Expect = 5e-26
Identities = 344/513 (67%), Gaps = 25/513 (5%)
Strand=Plus/Minus
Query 52336 TTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATC-GAGAGCGACACCGCCACGCTGGCC 52394
||||||| |||||| | ||||| ||||||||||| | || ||| | | | | | |||
Sbjct 16579 TTCGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGA-CGATAGCTCTTCCTTCGCC 16521
Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454
|||| |||| ||||||||| |||||||| | || || ||| ||| ||| ||
Sbjct 16520 CAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCC 16461
Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514
||||| | | || | | || | |||||||| ||||| ||| ||||||| | ||
Sbjct 16460 ATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATC 16401
Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACT---ACAAGACGCGC 52568
|| || || || || || ||||| |||||||| |||||| |||| || | || |
Sbjct 16400 TCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCAC 16341
Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAG--CATGTTCAAGGAGGCGGTGGCTA 52626
| || | || | | || || |||| ||| || || || || |
Sbjct 16340 -CGCCCTAGCAA--GCA---GGTCA-----TTGAGGACATTATCGTTGATGCCGTCAAGA 16292
Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686
| || ||||||| | || | || ||||| || || || ||||||||| | | |
Sbjct 16291 TTGAGCAGGAGTTCCTAACCGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACT 16232
Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGCAGCCA 52745
||| ||||||||||||| || || || ||||| ||||| |||| |||| | |
Sbjct 16231 TGATGAAGCAGTACATCGAGTTCGTTGCCGACCGTCTCTTGGT--TGCTCTTGGCAACGA 16174
Query 52746 -AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804
||| || ||| || ||| || ||||| || ||| | ||||| || |||| |||||
Sbjct 16173 CAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTTGGCGGCAA 16114
Query 52805 GACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||||||| || |||||||| || | ||| ||
Sbjct 16113 GACCAACTTCTTTGAGAAGCGCGTTGCCGACTA 16081
>seq791
Length=44334
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | |||||||| || ||||||||||||
Sbjct 42440 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 42499
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || || |||| |||| || ||||| ||||| || ||
Sbjct 42500 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 42559
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || || | |||| || | |||||||| |||||||||
Sbjct 42560 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGACGACTCCAC 42618
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||||| || | || || || ||||| || || || || |||||||||
Sbjct 42619 CTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 42667
>seq1741
Length=26822
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | ||| | | | || ||||| || |||||||||||||||
Sbjct 17197 CCGCCACGAAGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 17138
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || || || || || || || | |||| |||||||| ||||| |||||
Sbjct 17137 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGA 17078
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || || || ||| || || | | || | ||||| | ||||| |||
Sbjct 17077 ATACCCTCCTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACC 17018
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || ||||| ||||| || || || ||||||||
Sbjct 17017 TCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 16971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496245179694720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |