Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 129 6e-25
seq791 114 1e-20
seq1741 109 5e-19
seq1821 91.5 1e-13
>seq1932
Length=74184
Score = 129 bits (142), Expect = 6e-25
Identities = 1058/1688 (63%), Gaps = 86/1688 (5%)
Strand=Plus/Minus
Query 145921 ATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGC 145980
|||||||| |||| || | ||| ||||||| | ||| || | | ||||||||
Sbjct 59813 ATTTCCCAGACGGTCTTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGA 59754
Query 145981 ACAGACCCATTTTCGGCCA--ATA----TTTTGTTGCGCAATTCTGGAGTGTAAATGTTC 146034
|| || ||||| ||||| | ||| | || || ||| || ||| ||| | |
Sbjct 59753 ACGGAACCATTCTCGGCAATGATACGGTTCTTCATG-GCA--TC-GGACCATAA--GCCC 59700
Query 146035 AAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACG 146094
| ||| ||||| |||| | || | ||||||| ||||| ||||||||||| |||||
Sbjct 59699 ATGTCGACGAGATCCTTAAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACA 59640
Query 146095 CGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGC 146154
|| | | | || | |||| ||| | |||||||| |||||||||| || | |||||
Sbjct 59639 CGGCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGG 59580
Query 146155 GCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGT-CTTTG 146213
| || | || ||||||||| || || |||| | ||| | || |||||| | |||
Sbjct 59579 GAAGTGGAGGCAGTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTG 59520
Query 146214 AATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTT 146273
| ||| ||| || | ||| | ||| | | || | ||| | || ||| | |
Sbjct 59519 A-TCTGCTCCTTCAGAGAGTCCCAGTCCCAGA---GGTCAGAGGGCTTGACATTCCACAT 59464
Query 146274 GTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTC 146333
|||||| || | | || || | | ||| |||||||| || | ||| ||
Sbjct 59463 GTCGTACTGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTC 59404
Query 146334 GATCTTGGCCAGTT---CGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGAT 146390
| ||||||||| || | | | |||||| | ||| |||||||| ||
Sbjct 59403 CTCCCTGGCCAGTTGAACGGACATGGT---CAGAGCAGCGTGGTAGATGGTCTCGAAAAT 59347
Query 146391 CATGTAGTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAA--- 146446
| | | ||||| | || | ||||| ||| | || || | | || |||
Sbjct 59346 CTTCTTGTTGA-GATCGCGAGCCTCAGGAGACTCGAAAGGCAT---GCGTAGGGCAAGGA 59291
Query 146447 AGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCG 146506
|||| || || |||||||| | || | || | ||| ||||| | |||| |||||
Sbjct 59290 AGGCATCAGCAAGACCCTGGACACCAAGGCCGATGGGACGGTGACGCATGTTGCTGTTGC 59231
Query 146507 CAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAA 146566
||| | | | ||| ||||||||| || ||||||||||| || || || || || |
Sbjct 59230 GAGCCTCAGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGA 59171
Query 146567 TTTTCGTCAAACGATTCAGCA---GGACATAGTCAAATGTTTTAGTTTTAACGTTGACGC 146623
| || | | ||| ||| || || | | | ||| || || |||
Sbjct 59170 CCTGAGTGACCTCGTGAAGCTTCTGGAAATCGT-AGACACCCTCGTTGTA--GTCAACGA 59114
Query 146624 ACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACT 146683
| | | ||| | |||||||||||| ||||| ||| ||| || | |||| ||||
Sbjct 59113 AGGTAGGCAGGGCAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACT 59054
Query 146684 GCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAA 146743
| ||||| | |||||| ||| || |||| | || | || || ||||| ||
Sbjct 59053 CAATGATCTCAGTGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCT-- 58996
Query 146744 ACTTG---TTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCT 146800
|||| || || ||||||||| |||||| | || ||||| || | | ||
Sbjct 58995 -CTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCT 58937
Query 146801 CGACGATGAATCTAAACAAATCT-CTGGCCTTTACTTGTCTTTCGTACAGTTTATTCTTT 146859
||| |||| | | |||| || |||| | || | ||||| || | | |||
Sbjct 58936 CGAGGATGG--CGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCGCG 58879
Query 146860 -TCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGA 146916
||||| ||||||||||| || || || | ||||| ||| ||||||||
Sbjct 58878 CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCG--CCGTAGCAGTCAGCCAGGCCGGGG 58821
Query 146917 TACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAA 146976
||| |||||||| | || | |||||| |||| || || | | ||| |||| |
Sbjct 58820 CACTCGTTGGGACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGA 58761
Query 146977 TCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTG 147036
||||| ||||| ||| | || | | ||| ||||| | | ||||| ||| |||
Sbjct 58760 TCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTC 58701
Query 147037 CGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGT 147096
| ||||| | || || | | || | ||||||||||| | ||| |||||
Sbjct 58700 TTGCGCAAGTCCATGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAG 58641
Query 147097 GCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGT 147153
|| || ||| || || ||||| ||||||| ||| | |||| |||||||| ||
Sbjct 58640 GCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGA 58581
Query 147154 AACATGGACACGAGGCCGCCGGATTTTGTGGTGCCGTTG----------TATTG------ 147197
| ||||| | || ||| || | |||||||||| ||| |
Sbjct 58580 AGCATGGGAATGACACCG------TTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 58527
Query 147198 --AGCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCG 147255
|| | || | || || | || || | || || ||| || || |||| |||
Sbjct 58526 GTGGCACGGATACGGTGGGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCG 58467
Query 147256 GA-CTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAA 147314
| || || | ||| | |||||| || || ||| ||||||||| ||| |||||
Sbjct 58466 CAGGTCTTG-AGGGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAA 58408
Query 147315 ACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGT 147374
|| ||| ||| ||| || || || || || || |||||| |||||| ||
Sbjct 58407 GCATGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGT 58348
Query 147375 ---GAACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCC 147431
|||| || | || ||| | | || || |||||| ||| | ||| || || ||
Sbjct 58347 GAAGAACTTG-CTGGA--CATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACC 58291
Query 147432 GTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATT 147491
||| | | ||||| ||||||| ||||||||| |||| || |||||| | | |
Sbjct 58290 CCAGATGCCGACTGCGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTC 58231
Query 147492 GACTTTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTC 147551
|| || | || ||| | ||| ||||||||||| ||||| | ||||| | ||||
Sbjct 58230 GAGCTTCAGCAGGTATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTC 58171
Query 147552 CCTGTTGT 147559
| || ||
Sbjct 58170 GCGGTCGT 58163
>seq791
Length=44334
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| |||| || | || ||||| || || || ||||| |||
Sbjct 42440 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 42499
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| ||
Sbjct 42500 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 42559
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| || ||||| | |||| |||||| | ||| ||
Sbjct 42560 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 42619
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||| ||| | || ||||| ||||| || || || || |||||||||
Sbjct 42620 TCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 42667
>seq1741
Length=26822
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | ||| ||||| || ||||| ||||| |||
Sbjct 16969 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAT 16910
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || || ||||| ||||||| |||||||| || || ||
Sbjct 16909 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 16850
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || ||| ||||| | |||| ||| || | | ||||||
Sbjct 16849 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 16790
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|| | ||| | || ||||| || || || || ||
Sbjct 16789 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 16755
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | |||||||| || || || ||||| |||
Sbjct 16683 CCACCACGGAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 16624
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || || || || |||||| | || | |||||||||||||| ||
Sbjct 16623 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 16564
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || ||| ||||| |||| |||| ||| || | ||||||
Sbjct 16563 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG-TCGATGGTATCAGAGGACTCGAC 16505
Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089
|||| || | || ||||||||
Sbjct 16504 CTCGAGAGTGATGGTCTTGCCGGT 16481
>seq1821
Length=135001
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| || || ||||| || |||||| |||||
Sbjct 45970 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 45911
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| ||||| || ||||||||||||||| ||| || ||||| | |||
Sbjct 45910 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45851
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||| | |||||| || | ||| | || || || ||||| || || || |||
Sbjct 45850 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 45791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475484300122240
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