Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1932 129 6e-25 seq791 114 1e-20 seq1741 109 5e-19 seq1821 91.5 1e-13 >seq1932 Length=74184 Score = 129 bits (142), Expect = 6e-25 Identities = 1058/1688 (63%), Gaps = 86/1688 (5%) Strand=Plus/Minus Query 145921 ATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGC 145980 |||||||| |||| || | ||| ||||||| | ||| || | | |||||||| Sbjct 59813 ATTTCCCAGACGGTCTTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGA 59754 Query 145981 ACAGACCCATTTTCGGCCA--ATA----TTTTGTTGCGCAATTCTGGAGTGTAAATGTTC 146034 || || ||||| ||||| | ||| | || || ||| || ||| ||| | | Sbjct 59753 ACGGAACCATTCTCGGCAATGATACGGTTCTTCATG-GCA--TC-GGACCATAA--GCCC 59700 Query 146035 AAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACG 146094 | ||| ||||| |||| | || | ||||||| ||||| ||||||||||| ||||| Sbjct 59699 ATGTCGACGAGATCCTTAAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACA 59640 Query 146095 CGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGC 146154 || | | | || | |||| ||| | |||||||| |||||||||| || | ||||| Sbjct 59639 CGGCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGG 59580 Query 146155 GCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGT-CTTTG 146213 | || | || ||||||||| || || |||| | ||| | || |||||| | ||| Sbjct 59579 GAAGTGGAGGCAGTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTG 59520 Query 146214 AATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTT 146273 | ||| ||| || | ||| | ||| | | || | ||| | || ||| | | Sbjct 59519 A-TCTGCTCCTTCAGAGAGTCCCAGTCCCAGA---GGTCAGAGGGCTTGACATTCCACAT 59464 Query 146274 GTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTC 146333 |||||| || | | || || | | ||| |||||||| || | ||| || Sbjct 59463 GTCGTACTGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTC 59404 Query 146334 GATCTTGGCCAGTT---CGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGAT 146390 | ||||||||| || | | | |||||| | ||| |||||||| || Sbjct 59403 CTCCCTGGCCAGTTGAACGGACATGGT---CAGAGCAGCGTGGTAGATGGTCTCGAAAAT 59347 Query 146391 CATGTAGTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAA--- 146446 | | | ||||| | || | ||||| ||| | || || | | || ||| Sbjct 59346 CTTCTTGTTGA-GATCGCGAGCCTCAGGAGACTCGAAAGGCAT---GCGTAGGGCAAGGA 59291 Query 146447 AGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCG 146506 |||| || || |||||||| | || | || | ||| ||||| | |||| ||||| Sbjct 59290 AGGCATCAGCAAGACCCTGGACACCAAGGCCGATGGGACGGTGACGCATGTTGCTGTTGC 59231 Query 146507 CAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAA 146566 ||| | | | ||| ||||||||| || ||||||||||| || || || || || | Sbjct 59230 GAGCCTCAGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGA 59171 Query 146567 TTTTCGTCAAACGATTCAGCA---GGACATAGTCAAATGTTTTAGTTTTAACGTTGACGC 146623 | || | | ||| ||| || || | | | ||| || || ||| Sbjct 59170 CCTGAGTGACCTCGTGAAGCTTCTGGAAATCGT-AGACACCCTCGTTGTA--GTCAACGA 59114 Query 146624 ACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACT 146683 | | | ||| | |||||||||||| ||||| ||| ||| || | |||| |||| Sbjct 59113 AGGTAGGCAGGGCAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACT 59054 Query 146684 GCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAA 146743 | ||||| | |||||| ||| || |||| | || | || || ||||| || Sbjct 59053 CAATGATCTCAGTGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCT-- 58996 Query 146744 ACTTG---TTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCT 146800 |||| || || ||||||||| |||||| | || ||||| || | | || Sbjct 58995 -CTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCT 58937 Query 146801 CGACGATGAATCTAAACAAATCT-CTGGCCTTTACTTGTCTTTCGTACAGTTTATTCTTT 146859 ||| |||| | | |||| || |||| | || | ||||| || | | ||| Sbjct 58936 CGAGGATGG--CGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCGCG 58879 Query 146860 -TCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGA 146916 ||||| ||||||||||| || || || | ||||| ||| |||||||| Sbjct 58878 CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCG--CCGTAGCAGTCAGCCAGGCCGGGG 58821 Query 146917 TACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAA 146976 ||| |||||||| | || | |||||| |||| || || | | ||| |||| | Sbjct 58820 CACTCGTTGGGACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGA 58761 Query 146977 TCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTG 147036 ||||| ||||| ||| | || | | ||| ||||| | | ||||| ||| ||| Sbjct 58760 TCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTC 58701 Query 147037 CGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGT 147096 | ||||| | || || | | || | ||||||||||| | ||| ||||| Sbjct 58700 TTGCGCAAGTCCATGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAG 58641 Query 147097 GCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGT 147153 || || ||| || || ||||| ||||||| ||| | |||| |||||||| || Sbjct 58640 GCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGA 58581 Query 147154 AACATGGACACGAGGCCGCCGGATTTTGTGGTGCCGTTG----------TATTG------ 147197 | ||||| | || ||| || | |||||||||| ||| | Sbjct 58580 AGCATGGGAATGACACCG------TTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 58527 Query 147198 --AGCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCG 147255 || | || | || || | || || | || || ||| || || |||| ||| Sbjct 58526 GTGGCACGGATACGGTGGGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCG 58467 Query 147256 GA-CTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAA 147314 | || || | ||| | |||||| || || ||| ||||||||| ||| ||||| Sbjct 58466 CAGGTCTTG-AGGGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAA 58408 Query 147315 ACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGT 147374 || ||| ||| ||| || || || || || || |||||| |||||| || Sbjct 58407 GCATGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGT 58348 Query 147375 ---GAACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCC 147431 |||| || | || ||| | | || || |||||| ||| | ||| || || || Sbjct 58347 GAAGAACTTG-CTGGA--CATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACC 58291 Query 147432 GTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATT 147491 ||| | | ||||| ||||||| ||||||||| |||| || |||||| | | | Sbjct 58290 CCAGATGCCGACTGCGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTC 58231 Query 147492 GACTTTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTC 147551 || || | || ||| | ||| ||||||||||| ||||| | ||||| | |||| Sbjct 58230 GAGCTTCAGCAGGTATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTC 58171 Query 147552 CCTGTTGT 147559 | || || Sbjct 58170 GCGGTCGT 58163 >seq791 Length=44334 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| || | || ||||| || || || ||||| ||| Sbjct 42440 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 42499 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| || Sbjct 42500 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 42559 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 42560 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 42619 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || ||||| ||||| || || || || ||||||||| Sbjct 42620 TCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 42667 >seq1741 Length=26822 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || ||||| ||||| ||| Sbjct 16969 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAT 16910 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || ||||| ||||||| |||||||| || || || Sbjct 16909 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 16850 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||||| | |||| ||| || | | |||||| Sbjct 16849 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 16790 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 || | ||| | || ||||| || || || || || Sbjct 16789 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 16755 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| ||| Sbjct 16683 CCACCACGGAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 16624 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || || |||||| | || | |||||||||||||| || Sbjct 16623 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 16564 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || ||| ||||| |||| |||| ||| || | |||||| Sbjct 16563 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG-TCGATGGTATCAGAGGACTCGAC 16505 Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089 |||| || | || |||||||| Sbjct 16504 CTCGAGAGTGATGGTCTTGCCGGT 16481 >seq1821 Length=135001 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || |||||| ||||| Sbjct 45970 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 45911 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| ||||| || ||||||||||||||| ||| || ||||| | ||| Sbjct 45910 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45851 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || || || ||||| || || || ||| Sbjct 45850 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 45791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475484300122240