Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1932 183 4e-41 seq1058 122 1e-22 seq146 102 1e-16 >seq1932 Length=74184 Score = 183 bits (202), Expect = 4e-41 Identities = 1148/1826 (63%), Gaps = 75/1826 (4%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| ||||||||||| || |||||||| || | |||||| || Sbjct 59975 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATGCATGCTGGTG 59916 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | ||| || | |||| || ||| | ||||| || ||||||||| Sbjct 59915 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAG 59856 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734 || ||||| || ||||| | | || | | || | |||||||| || || Sbjct 59855 GCACCACGATCGGCAGCCATCTGGA---CAACGGTGCGCTGGGAGATTTCCCAGACGGTC 59799 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 |||| || ||| | || | || || | ||| || || | || ||| | Sbjct 59798 TTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGAACCATT---C 59742 Query 115795 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCC 115851 | | | |||| | | |||||| | | ||||| | || || | |||||||| Sbjct 59741 TCGGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACGAGATCCTTA 59682 Query 115852 A----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 115907 | | ||| | |||||||| ||||| || || || || | | | ||||| Sbjct 59681 AGCAGCCAGGGG----TTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGAT 59626 Query 115908 GTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 115967 ||||| ||||| ||||| |||||||| ||||| |||||||| |||| |||||||| || Sbjct 59625 GTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGT 59566 Query 115968 GGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAG 116027 |||||||| || | || || |||||||| | ||| || | || | ||||| || Sbjct 59565 AGGCATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAG 59506 Query 116028 GGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACC 116087 | ||||||||| || | | || | | |||||| || |||| |||||||| Sbjct 59505 AGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACC 59446 Query 116088 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---C 116144 ||||| || || ||||| | || || | ||||| || |||| || | Sbjct 59445 CTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAAC 59386 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 ||| | | | || || ||||| || || ||||| ||||| || | | Sbjct 59385 GGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCG 59329 Query 116205 GGCCTCGTCGGAATC-AAACGCGAG---ACGGCACAAAATAAATACATCCGCGAGACCTT 116260 ||||| || || ||| || | | |||| | || |||| || ||||| | Sbjct 59328 AGCCTCAGGAGACTCGAAAGGCATGCGTAGGGCA----AGGAAGGCATCAGCAAGACCCT 59273 Query 116261 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGG 116317 ||||||| ||||| || || || || | ||| || || ||||| ||| |||| Sbjct 59272 GGACACCAAGGCCGATGGGACGGTGACGCATGTTGCTGTTGCGAGC---CTCAGGAACGG 59216 Query 116318 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 116377 | || || ||| || | | | || || || | || |||| |||| || | Sbjct 59215 GGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGT 59156 Query 116378 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT---ACTTAGGAAGGGCGA 116434 ||||||| | | |||| | | | ||| | | | || | |||| ||||| | Sbjct 59155 GAAGCTTCTGGAAATCGTA---GACACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAA 59099 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 || |||| || || |||| |||||| | |||||| || || || || | Sbjct 59098 GAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGC 59039 Query 116495 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 | | ||| || || ||||| || | |||||| || || ||| ||| || | Sbjct 59038 AGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGT 58979 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 ||||||| ||||| | || | || ||||| || || | || ||| || || | ||| | Sbjct 58978 CCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAA 58919 Query 116615 -CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT---CCTC---CTCGTACTTTGTG 116667 | || | | || | ||| ||| || |||| | || ||||||||| | Sbjct 58918 GCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCTTCGCGCTCGTACTTCTCG 58866 Query 116668 TAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGACA 116726 || | |||||| ||||| || || ||| || | || || || || | ||||| Sbjct 58865 TACAAGGCCTCGAACTCCTCGCCGT-AGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACA 58807 Query 116727 GAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786 | ||| | ||||| | || ||| || | ||||||||| || || ||||||||||| Sbjct 58806 CATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAG 58747 Query 116787 CGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 || ||| || || ||| || | || || | || || || ||||| |||| Sbjct 58746 GGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCAT 58687 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTT 116900 || || | || ||| |||||||| || || ||||| | |||| | || | ||| Sbjct 58686 GAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTT 58627 Query 116901 GCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAAT 116960 | ||| |||||| || || | || || ||| || || |||||||| ||||| Sbjct 58626 G---TTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAAT 58570 Query 116961 GATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTG 117020 || ||| | ||| ||| || || || |||| || |||| | || | ||| Sbjct 58569 GACACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTG 58510 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 | || | |||||| || || ||| ||| ||||| ||||| | |||| || | Sbjct 58509 GGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTC 58450 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 |||||| || || || ||||| |||| | ||| ||||||||| |||| || Sbjct 58449 GTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCA 58390 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGAC 117198 | || ||||| ||||||||||| || || | |||||| ||| | | |||| |||| Sbjct 58389 CTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGAC 58332 Query 117199 ATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACC 117258 || | ||||||||| | ||| || || || || || |||| || ||| Sbjct 58331 ATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACA 58272 Query 117259 CGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTC 117318 ||||| | ||||| || ||| | || | | || |||||| || | ||||| Sbjct 58271 CGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGAT 58212 Query 117319 TTCTCCAAGGTCTTGAGACCAAAATA 117344 |||||| ||| |||| ||| || || Sbjct 58211 CTCTCCAGGGTTTTGAAACCGAAGTA 58186 >seq1058 Length=49244 Score = 122 bits (134), Expect = 1e-22 Identities = 305/461 (66%), Gaps = 22/461 (5%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || |||||||| |||||||| ||||| || | ||| ||| |||||||| Sbjct 16080 GTAGTCGGCAACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 16139 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCC-CAATCTGTTTGAG 127344 || ||||| ||||| || || | | | |||| || ||| | | Sbjct 16140 GAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAACC------AA 16193 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 |||||| || | ||| |||| ||||||| |||| | |||||||| |||| ||| Sbjct 16194 GAGACGGTCGGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAG 16253 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 || || || || || | |||| ||| |||||| | || || || | || Sbjct 16254 AGCGCAAGGCAGAGCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAAT 16313 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG---- 127520 | | | ||| | | | ||| | | || | | || ||||| | | || Sbjct 16314 GTCCTCAATGACCTGCTTGCTAGGGCGGT-GCTTGAGGTG----AGAGTACAAGAGGCAG 16368 Query 127521 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 |||| || |||||||||||| |||||||||||||| || || |||||| |||||| Sbjct 16369 GCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCG 16428 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | || | || ||||||||| Sbjct 16429 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATA 16488 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| ||| ||||| |||| || |||| ||| ||||| Sbjct 16489 CCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAGGA 16529 >seq146 Length=27175 Score = 102 bits (112), Expect = 1e-16 Identities = 275/413 (67%), Gaps = 21/413 (5%) Strand=Plus/Minus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || || ||||| || || | || || | |||||| ||||| | ||| || | ||| Sbjct 25581 TCGAAACGACCGGGACGCATCAGCGCCTTGTCAAGAATATCGGCTCTGTTGGTGCCAGCG 25522 Query 12765 ATGACAACGATGCCCG-TCTCGT-TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 | |||||||| || | ||| | | | ||| || |||||||| ||||||| || || | Sbjct 25521 AGGACAACGA--CCTGCTCTTGGGTGTTGAAACCGTCCATCTCGGTCAAGATCTGGTTCA 25464 Query 12823 TGGTTTGTTCACGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTGCTTA-CCG 12878 ||| ||| ||||| || || || ||| | ||| | ||| ||| | || Sbjct 25463 GAGTTGCTTCGCGTTCGTCGTTGCCGCCCATGCGGTTACCTTC-CTGTCTTGATCGGCCA 25405 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938 | |||||| || || |||||||| | |||||| || | | | ||| || | |||| Sbjct 25404 ATGGCGTCGATCTCATCAATGAAGATGATACAGGGGGCACTCTTACGAGCGTTTGCAAAC 25345 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998 | ||||||||||| | ||| ||||| ||||||||||| || || | ||||| Sbjct 25344 AAGTCTCGCACTCTTGAAGGACCAACACCGACAAACATCTCGACGAACT------CGGAA 25291 Query 12999 -CATTG-----GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052 || || || |||||| || ||| || || ||| |||| ||| || | ||| Sbjct 25290 CCACTGACGCTGAAGAAGGGCACACCGGACTCGCCGGCGGTGGCCTTGGCAAGCAACGTC 25231 Query 13053 TTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 || || || || || || ||||| | ||||||||| |||||| | || || Sbjct 25230 TTACCGGTTCCAGGAGGTCCGGCGAGGATGGCACCACGAGGGATCTTTGCGCC 25178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613485911300160