Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1058 131 3e-25
seq1932 129 9e-25
>seq1058
Length=49244
Score = 131 bits (144), Expect = 3e-25
Identities = 163/222 (73%), Gaps = 1/222 (0%)
Strand=Plus/Plus
Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974
||| |||||| ||||||||| ||| || ||||| || || ||||||| ||||||||| |
Sbjct 16358 ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGA 16417
Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034
| | || || ||||||| |||||| |||||||| || |||| || || |||||||
Sbjct 16418 AGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGC 16477
Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094
| || ||||| ||||| || || || || || || |||| || | || || | | |
Sbjct 16478 TGAAGAAGATACCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAGGAAGAGCTAT 16537
Query 160095 TGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA 160136
||| | ||||| | |||||| ||||||||| ||||||
Sbjct 16538 CGTCGCTGATCCACTTCAAGGCCCAGTCAGCCTTC-TTGCGA 16578
>seq1932
Length=74184
Score = 129 bits (142), Expect = 9e-25
Identities = 534/823 (65%), Gaps = 32/823 (4%)
Strand=Plus/Minus
Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990
|| |||||| ||||||||| || ||||||||| | |||||| || | ||| ||||
Sbjct 59007 CTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTC 58948
Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTGCTTCACG 205045
|||||| ||| || ||| | ||| | | | |||| | ||||| | |
Sbjct 58947 AGTCTGAGCCTCG-AGGATGGCGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCT 58889
Query 205046 TACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCC 205105
| | | | | | |||||| || ||||| ||| | || || ||||| |||
Sbjct 58888 TGCCTTC---GCG-CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCA 58833
Query 205106 ATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACC 205162
||| || || || | ||||||||||| || | ||| || | ||| ||| ||
Sbjct 58832 GCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCAT-TCGG--CGTTCTTCTCGACT 58776
Query 205163 CTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCG 205222
|||| ||| ||||| ||| |||||| ||| || || || ||||| || | | |
Sbjct 58775 CTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCC 58716
Query 205223 TCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATG---TCGGCGTGCCACGGC 205279
|| | || ||||||| |||||||| | | ||| | ||||||||||| |||
Sbjct 58715 TCCTTGCCGTGGTTCTTGCGCAAGTCCATGAA---CTCAAAGACATCGGCGTGCCAAGGC 58659
Query 205280 TCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTC 205339
|| | | | ||| | || || || | |||||| ||||||||||| || |||||
Sbjct 58658 TCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCA 58599
Query 205340 ATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTG 205399
| |||||| || || ||||| || | | |||||| | ||| ||||| |||| |
Sbjct 58598 GTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCCGTTGGTGCCGGCA 58539
Query 205400 ATGGCCGAGCCTTCAGCCC--TCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACT 205457
|| ||||| || | ||| ||| | | ||||| || |||| ||
Sbjct 58538 ATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTG--AGACCAATGCCACCAGCCATCT 58481
Query 205458 TGGCGATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCC 205516
||| |||| |||||| ||||| || ||| |||||| || | ||||| || ||| |
Sbjct 58480 TGGAGATCATGGCGCAGGTCTTG-AGGGTGTCGTAGATACCCTCAATGGAGTCTTCCTTC 58422
Query 205517 AGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAG-TTGGTGCCCGCGTGGAAGAGCG 205574
| |||| || || |||| |||| |||| ||||| | ||| || |||| |||||| |
Sbjct 58421 A-TGTCGACGAGGAAGCATGAAGACAGC-TGGCACTGAGGGGTACCGGCGTTGAAGAGTG 58364
Query 205575 TGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCT 205634
||||| ||||||| ||||| ||| | || |||||||||| | |||| ||
Sbjct 58363 TGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCAATGACGCGCT 58304
Query 205635 CCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCA 205694
| | |||| || || || | |||| | ||||| | ||| || ||||||||
Sbjct 58303 CAACATCGTCACCCCAGATGCCGACTGCGACACGCATGATCATGTGCTGCGGTCTCTCGG 58244
Query 205695 TCACCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGT 205737
| | | ||| | ||| ||||| || | |||||| |||||
Sbjct 58243 CAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTCCAGGGT 58201
Score = 125 bits (138), Expect = 1e-23
Identities = 377/570 (66%), Gaps = 9/570 (2%)
Strand=Plus/Minus
Query 203874 GCCTGCTT-CTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGC 203932
|||||| | | ||| ||||||||||| ||||| || || || ||| || | |||
Sbjct 59984 GCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATGC 59925
Query 203933 ATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGG 203992
||| | | |||| || | ||||| |||||| ||||| || |||||| |||
Sbjct 59924 ATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGG 59865
Query 203993 TCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCA 204051
|||||||| ||| || ||||| || ||||| | || || ||| ||| || || |||||
Sbjct 59864 TCGATGAA-GGCACCACGATCGGCAGCCATCTGGACAACGGTGCGCTGGGAGATTTCCCA 59806
Query 204052 CACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCACATCTTCCC-ACGTCCTGATCG-AG 204109
|| |||||| ||| | || | | || | || || | || |||| || |
Sbjct 59805 GACGGTCTTGTACAGAGCCTTGACCTCG-GCGGGA-ATGTTGGGGATGTTCTGAACGGAA 59748
Query 204110 CCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGC 204169
|| || ||||| || | | || || | | || ||| | ||||| || ||
Sbjct 59747 CCATTCTCGGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACGAGA 59688
Query 204170 TCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAAC 204229
||| | ||| |||||||| | ||| || || |||| || || | || | |
Sbjct 59687 TCCTTAAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAG 59628
Query 204230 AGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCC 204289
| |||| ||| | || ||||| |||||||||||| || ||||| | ||| |||
Sbjct 59627 ATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCA 59568
Query 204290 GTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTT 204348
|| ||||||||||| | ||||| |||||| ||||||| || | || |||| |||
Sbjct 59567 GTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGA-TCTGCTCCTT 59509
Query 204349 CAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGAT 204408
||||||| |||||| | || ||| || || |||||||||| |||||| |||
Sbjct 59508 CAGAGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGAT 59449
Query 204409 GCCTTGACTGACTGGGCTGCCCTTGTACGT 204438
|| || || ||| ||||| ||||||
Sbjct 59448 ACCCTGGGAGATAGGGGAGCCCTCGTACGT 59419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795127608114560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |