Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1058 131 3e-25 seq1932 129 9e-25 >seq1058 Length=49244 Score = 131 bits (144), Expect = 3e-25 Identities = 163/222 (73%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 ||| |||||| ||||||||| ||| || ||||| || || ||||||| ||||||||| | Sbjct 16358 ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGA 16417 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | | || || ||||||| |||||| |||||||| || |||| || || ||||||| Sbjct 16418 AGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGC 16477 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094 | || ||||| ||||| || || || || || || |||| || | || || | | | Sbjct 16478 TGAAGAAGATACCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAGGAAGAGCTAT 16537 Query 160095 TGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGA 160136 ||| | ||||| | |||||| ||||||||| |||||| Sbjct 16538 CGTCGCTGATCCACTTCAAGGCCCAGTCAGCCTTC-TTGCGA 16578 >seq1932 Length=74184 Score = 129 bits (142), Expect = 9e-25 Identities = 534/823 (65%), Gaps = 32/823 (4%) Strand=Plus/Minus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 || |||||| ||||||||| || ||||||||| | |||||| || | ||| |||| Sbjct 59007 CTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTC 58948 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCA----CTTGCTTCACG 205045 |||||| ||| || ||| | ||| | | | |||| | ||||| | | Sbjct 58947 AGTCTGAGCCTCG-AGGATGGCGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCT 58889 Query 205046 TACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCC 205105 | | | | | | |||||| || ||||| ||| | || || ||||| ||| Sbjct 58888 TGCCTTC---GCG-CTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCA 58833 Query 205106 ATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACC 205162 ||| || || || | ||||||||||| || | ||| || | ||| ||| || Sbjct 58832 GCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCAT-TCGG--CGTTCTTCTCGACT 58776 Query 205163 CTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCG 205222 |||| ||| ||||| ||| |||||| ||| || || || ||||| || | | | Sbjct 58775 CTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCC 58716 Query 205223 TCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATG---TCGGCGTGCCACGGC 205279 || | || ||||||| |||||||| | | ||| | ||||||||||| ||| Sbjct 58715 TCCTTGCCGTGGTTCTTGCGCAAGTCCATGAA---CTCAAAGACATCGGCGTGCCAAGGC 58659 Query 205280 TCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTC 205339 || | | | ||| | || || || | |||||| ||||||||||| || ||||| Sbjct 58658 TCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCA 58599 Query 205340 ATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTG 205399 | |||||| || || ||||| || | | |||||| | ||| ||||| |||| | Sbjct 58598 GTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCCGTTGGTGCCGGCA 58539 Query 205400 ATGGCCGAGCCTTCAGCCC--TCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACT 205457 || ||||| || | ||| ||| | | ||||| || |||| || Sbjct 58538 ATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTG--AGACCAATGCCACCAGCCATCT 58481 Query 205458 TGGCGATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCC 205516 ||| |||| |||||| ||||| || ||| |||||| || | ||||| || ||| | Sbjct 58480 TGGAGATCATGGCGCAGGTCTTG-AGGGTGTCGTAGATACCCTCAATGGAGTCTTCCTTC 58422 Query 205517 AGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAG-TTGGTGCCCGCGTGGAAGAGCG 205574 | |||| || || |||| |||| |||| ||||| | ||| || |||| |||||| | Sbjct 58421 A-TGTCGACGAGGAAGCATGAAGACAGC-TGGCACTGAGGGGTACCGGCGTTGAAGAGTG 58364 Query 205575 TGGGGCTGGCGTGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCT 205634 ||||| ||||||| ||||| ||| | || |||||||||| | |||| || Sbjct 58363 TGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGTCTCAATGACGCGCT 58304 Query 205635 CCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCA 205694 | | |||| || || || | |||| | ||||| | ||| || |||||||| Sbjct 58303 CAACATCGTCACCCCAGATGCCGACTGCGACACGCATGATCATGTGCTGCGGTCTCTCGG 58244 Query 205695 TCACCCTCTCGTTCACCTTGAGCAGATAGGCTCTCTCTAGGGT 205737 | | | ||| | ||| ||||| || | |||||| ||||| Sbjct 58243 CAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTCCAGGGT 58201 Score = 125 bits (138), Expect = 1e-23 Identities = 377/570 (66%), Gaps = 9/570 (2%) Strand=Plus/Minus Query 203874 GCCTGCTT-CTCAGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGC 203932 |||||| | | ||| ||||||||||| ||||| || || || ||| || | ||| Sbjct 59984 GCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATGC 59925 Query 203933 ATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGG 203992 ||| | | |||| || | ||||| |||||| ||||| || |||||| ||| Sbjct 59924 ATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGG 59865 Query 203993 TCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCA 204051 |||||||| ||| || ||||| || ||||| | || || ||| ||| || || ||||| Sbjct 59864 TCGATGAA-GGCACCACGATCGGCAGCCATCTGGACAACGGTGCGCTGGGAGATTTCCCA 59806 Query 204052 CACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCACATCTTCCC-ACGTCCTGATCG-AG 204109 || |||||| ||| | || | | || | || || | || |||| || | Sbjct 59805 GACGGTCTTGTACAGAGCCTTGACCTCG-GCGGGA-ATGTTGGGGATGTTCTGAACGGAA 59748 Query 204110 CCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGC 204169 || || ||||| || | | || || | | || ||| | ||||| || || Sbjct 59747 CCATTCTCGGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACGAGA 59688 Query 204170 TCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAAC 204229 ||| | ||| |||||||| | ||| || || |||| || || | || | | Sbjct 59687 TCCTTAAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAG 59628 Query 204230 AGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCC 204289 | |||| ||| | || ||||| |||||||||||| || ||||| | ||| ||| Sbjct 59627 ATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCA 59568 Query 204290 GTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTT 204348 || ||||||||||| | ||||| |||||| ||||||| || | || |||| ||| Sbjct 59567 GTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGA-TCTGCTCCTT 59509 Query 204349 CAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGAT 204408 ||||||| |||||| | || ||| || || |||||||||| |||||| ||| Sbjct 59508 CAGAGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGAT 59449 Query 204409 GCCTTGACTGACTGGGCTGCCCTTGTACGT 204438 || || || ||| ||||| |||||| Sbjct 59448 ACCCTGGGAGATAGGGGAGCCCTCGTACGT 59419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795127608114560