Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq791 154 2e-32 seq1821 134 2e-26 seq1741 100 3e-16 >seq791 Length=44334 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||| ||||| ||||||||||| || ||||| || Sbjct 42452 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 42511 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| |||||||| |||| |||||||||||||| || | | ||||||| Sbjct 42512 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTG 42571 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | |||||| ||| ||||| || | ||||| Sbjct 42572 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATA 42631 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| || || || ||||| ||||| Sbjct 42632 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666 >seq1821 Length=135001 Score = 134 bits (148), Expect = 2e-26 Identities = 147/194 (76%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 46392 GCAATGT-ACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGC 46450 |||||| ||| |||| ||||| ||||||||||| || ||||| |||| || |||||| Sbjct 45985 GCAATGAGACTAACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGC 45926 Query 46451 TTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTC 46510 ||||| ||||| ||||||||||||||||||| || | || |||||||||| |||||| Sbjct 45925 TTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 45866 Query 46511 TTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTC 46570 ||||| | | | ||||||| || || || || | || ||||| || |||||| Sbjct 45865 GACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTC 45806 Query 46571 AGCGTTTTAACAAA 46584 || || || || || Sbjct 45805 AGGGTCTTCACGAA 45792 >seq1741 Length=26822 Score = 100 bits (110), Expect = 3e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || || |||||||| ||||| Sbjct 16648 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAA 16589 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| |||| || | || |||||||||| |||||| ||||| ||| Sbjct 16588 AATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 16530 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | || || || || || || | |||||||| ||||| || Sbjct 16529 TGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 16481 Score = 100 bits (110), Expect = 3e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||||||||| ||||| | || || || |||||||| || || Sbjct 16934 CTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 16875 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 16874 GATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 16815 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || || || || || || | |||||||| ||||| || || || || || Sbjct 16814 GTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 16755 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||| || ||||| | || || |||||||| || ||||| Sbjct 17161 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAG 17102 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | | |||||| ||| |||||| ||| | ||| Sbjct 17101 ATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGACTTCA-CGTT 17043 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || || || |||| || || || ||||| || || || || || Sbjct 17042 GTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCAC 16983 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 16982 GAAGATCTGCAT 16971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565218786227520