Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq791 154 2e-32
seq1821 134 2e-26
seq1741 100 3e-16
>seq791
Length=44334
Score = 154 bits (170), Expect = 2e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||| ||||| ||||||||||| || ||||| ||
Sbjct 42452 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 42511
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||| |||||||| |||| |||||||||||||| || | | |||||||
Sbjct 42512 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTG 42571
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| ||| ||||| || | |||||
Sbjct 42572 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATA 42631
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||||||||| || || || ||||| |||||
Sbjct 42632 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666
>seq1821
Length=135001
Score = 134 bits (148), Expect = 2e-26
Identities = 147/194 (76%), Gaps = 1/194 (1%)
Strand=Plus/Minus
Query 46392 GCAATGT-ACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGC 46450
|||||| ||| |||| ||||| ||||||||||| || ||||| |||| || ||||||
Sbjct 45985 GCAATGAGACTAACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGC 45926
Query 46451 TTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTC 46510
||||| ||||| ||||||||||||||||||| || | || |||||||||| ||||||
Sbjct 45925 TTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 45866
Query 46511 TTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTC 46570
||||| | | | ||||||| || || || || | || ||||| || ||||||
Sbjct 45865 GACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTC 45806
Query 46571 AGCGTTTTAACAAA 46584
|| || || || ||
Sbjct 45805 AGGGTCTTCACGAA 45792
>seq1741
Length=26822
Score = 100 bits (110), Expect = 3e-16
Identities = 125/169 (74%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || || |||||||| |||||
Sbjct 16648 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAA 16589
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| |||| || | || |||||||||| |||||| ||||| |||
Sbjct 16588 AATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGT 16530
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | || || || || || || | |||||||| ||||| ||
Sbjct 16529 TGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 16481
Score = 100 bits (110), Expect = 3e-16
Identities = 130/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || |||||||||||||| ||||| | || || || |||||||| || ||
Sbjct 16934 CTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 16875
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 16874 GATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATT 16815
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | || || || || || || | |||||||| ||||| || || || || ||
Sbjct 16814 GTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 16755
Score = 96.9 bits (106), Expect = 4e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||| || ||||| | || || |||||||| || |||||
Sbjct 17161 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAG 17102
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | ||||||||||||| || | | |||||| ||| |||||| ||| | |||
Sbjct 17101 ATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGACTTCA-CGTT 17043
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| || || || |||| || || || ||||| || || || || ||
Sbjct 17042 GTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCAC 16983
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 16982 GAAGATCTGCAT 16971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565218786227520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |