Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1058 136 4e-27 seq791 131 2e-25 seq1741 118 1e-21 seq1821 111 2e-19 >seq1058 Length=49244 Score = 136 bits (150), Expect = 4e-27 Identities = 196/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||||||| || || | || ||||| | ||||||||| ||| || || Sbjct 16691 GTAAGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAA 16750 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || ||||| ||||| ||||| | ||| ||||| || || || Sbjct 16751 ACCGTAGAAGCAGCGAGCCTCAGGGACCTGGACTTCGCCGGAGAAGCGCTCAACGAGGTT 16810 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||||||| |||||||| ||||| || | ||| |||||| | Sbjct 16811 CTCGTTGACGATGCCGTCGGATGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGTACTT 16870 Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||| || | | ||||||| | |||||||| || || | |||||| Sbjct 16871 CTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTC 16930 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || ||||| || || || ||||| Sbjct 16931 AGCGGTCCAGAAAGAGGCCTCAGCCTTCTTATACAT 16966 Score = 132 bits (146), Expect = 5e-26 Identities = 290/432 (67%), Gaps = 2/432 (0%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 16096 TTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTG 16155 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||| |||| | | || | || | || | |||||| ||||||||| Sbjct 16156 GAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAACCAAGAGACGGTCGGCAACGAACTCG 16215 Query 132745 ATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGT 132803 ||||| ||| ||| | | | || | || || ||| |||| ||||| || ||||| Sbjct 16216 ATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGCAA-GGCAGAGCCTCGGT 16274 Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863 || || ||||| || ||| || || || || ||| || | | | ||| Sbjct 16275 TAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAATGTCCTCAATGACCTGCTTGCT 16334 Query 132864 CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTC 132923 || || ||| | || | ||| | ||| ||||||||| || | ||||| || Sbjct 16335 AGGGCGGTGCTTGAGGTGAGAGTACAAGAGGCAGGCAAAGTCGGTGTGGAGACCCTCATC 16394 Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983 | ||| ||||| |||||| ||| |||| ||||||||||| || || || |||||||| Sbjct 16395 ACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCA 16454 Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043 || |||| |||||| || ||||||| |||||||| || ||||| || ||||| Sbjct 16455 GAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACAGCGGCGAAGGCAACCAG 16514 Query 133044 GCGCTCGCCGAA 133055 |||| | |||| Sbjct 16515 CCGCTGGGCGAA 16526 >seq791 Length=44334 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || |||||| |||| || ||| | || Sbjct 42666 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 42607 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 42606 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 42547 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 42546 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 42487 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| ||||| Sbjct 42486 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 42452 >seq1741 Length=26822 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| |||||||| |||| |||||| || | || | | | | |||| | || Sbjct 16479 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACG-TCAAG 16537 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || || | ||||| ||||| || ||| |||| || ||||| ||||||| ||| ||| Sbjct 16538 TCGAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGC 16597 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || || || || |||| ||||||||| ||||||||||||||| ||||| | || || Sbjct 16598 AAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTC 16657 Query 38445 CATTTGGTGCTGCG 38458 || ||||| || || Sbjct 16658 CACTTGGTTCTCCG 16671 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || || || | || |||||| | | Sbjct 16971 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATTACTTTGGAGGTCGAGTCATCA 17030 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || || |||| || || ||||| ||||| ||||||| Sbjct 17031 GACACGATTGACAACG-TGAAGTCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCA 17089 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| || | |||||||| | ||||||||| Sbjct 17090 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGAGCGACTACAA 17149 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || || ||| | || || ||| | | ||||| Sbjct 17150 CATCCAGAAGGAATCCACCCTTCATCTCGTACTCCGTCTTCGTGGCGG 17197 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| ||||||||| | || |||||| | | || | | | Sbjct 16753 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 16812 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || || | ||||| ||||| |||||| | ||||| ||||| | | Sbjct 16813 ACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGA 16872 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | || ||||| || || || || | |||||||| |||||||||||| || |||| Sbjct 16873 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTATCCGACTACAACATTCAGAAGG 16932 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 | | ||||| || ||||| || ||| Sbjct 16933 AGTCCACGCTCCACTTGGTTCTCCGT 16958 >seq1821 Length=135001 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || |||||| | Sbjct 45792 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 45851 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| ||||||| ||||| | Sbjct 45852 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 45911 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| ||| Sbjct 45912 ATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 45971 Query 38433 G 38433 | Sbjct 45972 G 45972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155444003840