Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1058 136 4e-27
seq791 131 2e-25
seq1741 118 1e-21
seq1821 111 2e-19
>seq1058
Length=49244
Score = 136 bits (150), Expect = 4e-27
Identities = 196/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| |||||||||||| || || | || ||||| | ||||||||| ||| || ||
Sbjct 16691 GTAAGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAA 16750
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || ||||| ||||| ||||| | ||| ||||| || || ||
Sbjct 16751 ACCGTAGAAGCAGCGAGCCTCAGGGACCTGGACTTCGCCGGAGAAGCGCTCAACGAGGTT 16810
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||||||||||||| |||||||| ||||| || | ||| |||||| |
Sbjct 16811 CTCGTTGACGATGCCGTCGGATGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGTACTT 16870
Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | |||| || | | ||||||| | |||||||| || || | ||||||
Sbjct 16871 CTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCCTC 16930
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||| || || ||||| || || || |||||
Sbjct 16931 AGCGGTCCAGAAAGAGGCCTCAGCCTTCTTATACAT 16966
Score = 132 bits (146), Expect = 5e-26
Identities = 290/432 (67%), Gaps = 2/432 (0%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
|||||||| || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 16096 TTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTG 16155
Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744
| | |||||| |||| | | || | || | || | |||||| |||||||||
Sbjct 16156 GAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAACCAAGAGACGGTCGGCAACGAACTCG 16215
Query 132745 ATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGT 132803
||||| ||| ||| | | | || | || || ||| |||| ||||| || |||||
Sbjct 16216 ATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGCAA-GGCAGAGCCTCGGT 16274
Query 132804 GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT 132863
|| || ||||| || ||| || || || || ||| || | | | |||
Sbjct 16275 TAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAATGTCCTCAATGACCTGCTTGCT 16334
Query 132864 CGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTC 132923
|| || ||| | || | ||| | ||| ||||||||| || | ||||| ||
Sbjct 16335 AGGGCGGTGCTTGAGGTGAGAGTACAAGAGGCAGGCAAAGTCGGTGTGGAGACCCTCATC 16394
Query 132924 CCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCA 132983
| ||| ||||| |||||| ||| |||| ||||||||||| || || || ||||||||
Sbjct 16395 ACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCA 16454
Query 132984 AAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAG 133043
|| |||| |||||| || ||||||| |||||||| || ||||| || |||||
Sbjct 16455 GAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACAGCGGCGAAGGCAACCAG 16514
Query 133044 GCGCTCGCCGAA 133055
|||| | ||||
Sbjct 16515 CCGCTGGGCGAA 16526
>seq791
Length=44334
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || |||||||| || |||||| |||| || ||| | ||
Sbjct 42666 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 42607
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || |||| ||||| ||||| || ||| |||||||
Sbjct 42606 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 42547
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| || || ||||| || |||| ||||||||| ||||||||||
Sbjct 42546 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 42487
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || || |||| |||||
Sbjct 42486 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 42452
>seq1741
Length=26822
Score = 118 bits (130), Expect = 1e-21
Identities = 144/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| |||||||| |||| |||||| || | || | | | | |||| | ||
Sbjct 16479 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACG-TCAAG 16537
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| || | ||||| ||||| || ||| |||| || ||||| ||||||| ||| |||
Sbjct 16538 TCGAAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGC 16597
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| || || || |||| ||||||||| ||||||||||||||| ||||| | || ||
Sbjct 16598 AAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTC 16657
Query 38445 CATTTGGTGCTGCG 38458
|| ||||| || ||
Sbjct 16658 CACTTGGTTCTCCG 16671
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| || || || | || |||||| | |
Sbjct 16971 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATTACTTTGGAGGTCGAGTCATCA 17030
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || |||| | || || |||| || || ||||| ||||| |||||||
Sbjct 17031 GACACGATTGACAACG-TGAAGTCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCA 17089
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | ||| || || |||||||| || | |||||||| | |||||||||
Sbjct 17090 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGAGCGACTACAA 17149
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| |||||| | || || ||| | || || ||| | | |||||
Sbjct 17150 CATCCAGAAGGAATCCACCCTTCATCTCGTACTCCGTCTTCGTGGCGG 17197
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| ||||||||| | || |||||| | | || | | |
Sbjct 16753 TCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 16812
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || || | ||||| ||||| |||||| | ||||| ||||| | |
Sbjct 16813 ACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGA 16872
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | || ||||| || || || || | |||||||| |||||||||||| || ||||
Sbjct 16873 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTATCCGACTACAACATTCAGAAGG 16932
Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459
| | ||||| || ||||| || |||
Sbjct 16933 AGTCCACGCTCCACTTGGTTCTCCGT 16958
>seq1821
Length=135001
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || |||||| |
Sbjct 45792 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 45851
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| ||||||| ||||| |
Sbjct 45852 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 45911
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| |||
Sbjct 45912 ATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 45971
Query 38433 G 38433
|
Sbjct 45972 G 45972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500155444003840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |