Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq360 279 7e-70 seq659 132 6e-26 seq64 127 3e-24 seq1932 86.0 8e-12 >seq360 Length=39165 Score = 279 bits (308), Expect = 7e-70 Identities = 769/1177 (65%), Gaps = 25/1177 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||||| || |||| || || || | ||| |||||||| || || || Sbjct 34228 TCATCCTCATCCTTGAACTTCTCGGCCTCAGCAAGCATGCGCTCAATGTCCTCCTTGGAA 34169 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||| || || | |||| || || Sbjct 34168 AGGCGGCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTGCCGGTACCCTTCTCGACA 34109 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| || || || || |||| ||||| | || | ||| || || | Sbjct 34108 GCGGAGACGTTCATGATTCCGTTGGCGTCAAGGTCGAAGGTGACCTCAATCTGGGGGACA 34049 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || |||| ||||| || || | || || | || || | |||| ||| | Sbjct 34048 CCGCGGGGGGCGGGGGGAATGCCGGTAAGCTCGAACTTGCCGAGAAGGTTGTTGTCCTTG 33989 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGTG 6866 | || || ||||| || ||||| | || | ||||| || || || || Sbjct 33988 GTGCGCTGGCGCTCACCCTCGTAGACCTGGATGAGGACACCG--GGCTGGTTGTCGGAGA 33931 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || ||||||| | ||||| | ||||| || || || | ||||| | | || Sbjct 33930 AGGTGGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGAATGAGCTTGG 33871 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| || ||||| ||| |||| || || |||||||| | ||||| ||| | || Sbjct 33870 TCATCATGCCACCAGCAGTCTCGATACCGAGGGACAGAGGGGCAACGTC---GAGAAGCA 33814 Query 6987 GG-TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGA 7034 || ||| | || || | ||| |||| | | |||||||| |||| Sbjct 33813 GGATCTCG------TTGGTACTCTTGGAGGAGGTGTCACCGGACAGAATGGCGGCCTGGA 33760 Query 7035 CCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGT 7094 | | || ||||| || || |||||||||||||| || | || || | || || || | Sbjct 33759 CAGCGGCGCCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTGCCAT 33700 Query 7095 TAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAA 7154 | || || || || | | | |||| ||||| || || || || ||||||| | Sbjct 33699 TGAAGTAGTCGGAGATGAGCTTCTGAACACGAGGGATACGGGTGGAACCTCCGACCAGGA 33640 Query 7155 CGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTT 7214 |||| || | || | || || |||| ||| | ||| || ||||| || | Sbjct 33639 CGATCTCGTGGACCTGGGACTTGTCGACCTTAGCGTCGGTGAGGACACGGTCGACGGGCT 33580 Query 7215 CCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATG 7274 || ||||||| |||| || || ||||| || || |||||||| ||||| | Sbjct 33579 GGATGGTAGAGCGGAACAGGTCCTGGCAGAGCTCCTCGAAGCGAGCACGGGTGATGGAGG 33520 Query 7275 TATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAG 7334 | ||||| || | || ||| | | || || || || |||| || || || | ||| | Sbjct 33519 TGTAGAAGTCGATACCCTCGAACAGAGAGTCGATCTCGATGGAGGTCTGGGCAGACGAGG 33460 Query 7335 ATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTAC 7394 | | || ||||| || ||||| || || || || | ||| || |||||||| | ||| Sbjct 33459 ACAGGGTGCGCTTGGCACGCTCGCAAGCGGTGCGAAGACGGCGCAGGGCACGGGCGTTGG 33400 Query 7395 CGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCG 7454 ||| | ||| ||||| || || ||||| ||||| | |||||| || ||| | Sbjct 33399 AGGACAGATCCTTCTTGTGCTTGCGTTTGAACTCGTTGACGAAGTGGTTAACGAGACGGT 33340 Query 7455 AATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATAC 7514 ||||| || |||||||||||||| || || || ||||| | ||||| || ||||||| Sbjct 33339 TGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATAC 33280 Query 7515 CTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | | |||||| | | | || ||||| || ||||||||||| || || || ||||| | Sbjct 33279 CCTCCTCAATGGTCAGGAGAGACACATCGAAGGTACCACCACCAAGATCGAAGATGAGAA 33220 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 |||| ||| | || ||||| || |||||||| || || || || || || || | Sbjct 33219 CGTTGCGCTCGCCCTCGGCCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCGGTAGGCT 33160 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || || ||||| || ||| ||||| ||||| | || || || || || || | Sbjct 33159 CGTTGATGATACGGAGGACGTTGAGGCCGGCAATGAGACCGGCGTCCTTGGTAGCCTGAC 33100 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | || || ||||| |||||||| ||||| || || || Sbjct 33099 GCTGAGAGTCGTTGAAGTAGGCGGGGACAGTGACAAC 33063 >seq659 Length=26358 Score = 132 bits (146), Expect = 6e-26 Identities = 226/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||||| || ||| || |||| ||| Sbjct 25240 TCGAAATCCTCACCACCCAAGTGGGTGTCACCGGCGGTAGCCAGGACCTCGAAGACACCC 25299 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | | |||||||| || ||||||||||| ||||| | | || | Sbjct 25300 TGGTCGATGGACAGAAGAGAAACATCGAAAGTACCACCACCAAGGTCGTAGACGATGATC 25359 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || |||| | |||| || |||||||| |||||||| || || || || || Sbjct 25360 TGGCGCTCACCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTCG 25416 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | || || ||| ||| || || ||||| | ||||| || || || || || Sbjct 25417 TTGACAACGCGGAGAACGTTAAGTCCGGCAATGACACCGGCATCCTTGGTGGCCTGGCGC 25476 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || ||||| |||| || || ||||| || || Sbjct 25477 TGGTTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTGGGTAACCTTCTTGCCAAGG 25536 Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783 || | || |||| || ||||| ||| Sbjct 25537 TAGGCCTCGGCGACCTCCTTCATCTTG 25563 >seq64 Length=120308 Score = 127 bits (140), Expect = 3e-24 Identities = 343/521 (66%), Gaps = 13/521 (2%) Strand=Plus/Minus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAA 7299 ||| ||||| ||||| |||||||| || || || ||| || |||| ||| | | Sbjct 114929 CAGGTCCTCGAAACGAGCACGGGTGATCTGGGTGGTGTAG---TCCTCGCCATCGAAGAG 114873 Query 7300 CGAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357 || || || ||||| || || || || || | || | || ||||| || ||||| Sbjct 114872 AGAGTCGATCTCAATAGTGGTCTGGGCACCGCTG--GAAAGGGTACGCTTGGCACGCTCG 114815 Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417 || || || || | ||| || |||||||| |||| || || | || ||||| || Sbjct 114814 CAAGCAGTACGGAGACGGCGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTG 114755 Query 7418 CGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 || | || || | | |||| || || | | ||||| || | ||| |||||| Sbjct 114754 CGCTGGAAGTCCTTCTTGCAGTGGTCCAGAAGGTTGGTGTCGAAGTCCTGACCTCCCAAG 114695 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || || || || ||||| |||| ||| || | ||||| | | || Sbjct 114694 TGGGTGTCACCAGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTAAGGAGGGAC 114635 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTG 7594 ||||| || ||||||||||||| ||| | ||||| ||||| || | | | ||| Sbjct 114634 ACATCGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTG 114575 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | | |||||||| || || || || || || || || || || ||||| ||| | Sbjct 114574 CCGGCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGAACG 114515 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || || || | | || || || || || || || || ||||| |||||| Sbjct 114514 TTAAGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 114455 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| || | ||| || | | ||| ||||| || || Sbjct 114454 GCAGGGACGGTGATGACAGCCTTCTCGACCTTCTTGCCAAG 114414 >seq1932 Length=74184 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 104707 TAGATATTGGTCGTATACGGTTCGAAACACTCGTTGTTCCCTAAAATCTGGGATGTGGAT 104766 ||||| |||| || || || ||||| ||||||||||| || || |||||||| ||||| Sbjct 59630 TAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAG 59571 Query 104767 GCGGTAGGCATAGGTGCAAGAAGAAGACTATT 104798 || |||||||| || |||| ||| ||||| || Sbjct 59570 GCAGTAGGCATGGGAGCAACAAGCAGACTGTT 59539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635110760891840