Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq360 279 7e-70
seq659 132 6e-26
seq64 127 3e-24
seq1932 86.0 8e-12
>seq360
Length=39165
Score = 279 bits (308), Expect = 7e-70
Identities = 769/1177 (65%), Gaps = 25/1177 (2%)
Strand=Plus/Minus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| ||||| || |||| || || || | ||| |||||||| || || ||
Sbjct 34228 TCATCCTCATCCTTGAACTTCTCGGCCTCAGCAAGCATGCGCTCAATGTCCTCCTTGGAA 34169
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
| | ||||| || || || || |||||| | ||| || || | |||| || ||
Sbjct 34168 AGGCGGCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTGCCGGTACCCTTCTCGACA 34109
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
|| || |||| || || || || |||| ||||| | || | ||| || || |
Sbjct 34108 GCGGAGACGTTCATGATTCCGTTGGCGTCAAGGTCGAAGGTGACCTCAATCTGGGGGACA 34049
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | || |||| ||||| || || | || || | || || | |||| ||| |
Sbjct 34048 CCGCGGGGGGCGGGGGGAATGCCGGTAAGCTCGAACTTGCCGAGAAGGTTGTTGTCCTTG 33989
Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGTG 6866
| || || ||||| || ||||| | || | ||||| || || || ||
Sbjct 33988 GTGCGCTGGCGCTCACCCTCGTAGACCTGGATGAGGACACCG--GGCTGGTTGTCGGAGA 33931
Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926
|| ||||||| | ||||| | ||||| || || || | ||||| | | ||
Sbjct 33930 AGGTGGAGAAGACCTCGGACTTCTTGGTGGGAATGGTGGTGTTGCGGGGAATGAGCTTGG 33871
Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986
|||| || ||||| ||| |||| || || |||||||| | ||||| ||| | ||
Sbjct 33870 TCATCATGCCACCAGCAGTCTCGATACCGAGGGACAGAGGGGCAACGTC---GAGAAGCA 33814
Query 6987 GG-TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGA 7034
|| ||| | || || | ||| |||| | | |||||||| ||||
Sbjct 33813 GGATCTCG------TTGGTACTCTTGGAGGAGGTGTCACCGGACAGAATGGCGGCCTGGA 33760
Query 7035 CCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGT 7094
| | || ||||| || || |||||||||||||| || | || || | || || || |
Sbjct 33759 CAGCGGCGCCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTGCCAT 33700
Query 7095 TAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAA 7154
| || || || || | | | |||| ||||| || || || || ||||||| |
Sbjct 33699 TGAAGTAGTCGGAGATGAGCTTCTGAACACGAGGGATACGGGTGGAACCTCCGACCAGGA 33640
Query 7155 CGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTT 7214
|||| || | || | || || |||| ||| | ||| || ||||| || |
Sbjct 33639 CGATCTCGTGGACCTGGGACTTGTCGACCTTAGCGTCGGTGAGGACACGGTCGACGGGCT 33580
Query 7215 CCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATG 7274
|| ||||||| |||| || || ||||| || || |||||||| ||||| |
Sbjct 33579 GGATGGTAGAGCGGAACAGGTCCTGGCAGAGCTCCTCGAAGCGAGCACGGGTGATGGAGG 33520
Query 7275 TATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAG 7334
| ||||| || | || ||| | | || || || || |||| || || || | ||| |
Sbjct 33519 TGTAGAAGTCGATACCCTCGAACAGAGAGTCGATCTCGATGGAGGTCTGGGCAGACGAGG 33460
Query 7335 ATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTAC 7394
| | || ||||| || ||||| || || || || | ||| || |||||||| | |||
Sbjct 33459 ACAGGGTGCGCTTGGCACGCTCGCAAGCGGTGCGAAGACGGCGCAGGGCACGGGCGTTGG 33400
Query 7395 CGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCG 7454
||| | ||| ||||| || || ||||| ||||| | |||||| || ||| |
Sbjct 33399 AGGACAGATCCTTCTTGTGCTTGCGTTTGAACTCGTTGACGAAGTGGTTAACGAGACGGT 33340
Query 7455 AATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATAC 7514
||||| || |||||||||||||| || || || ||||| | ||||| || |||||||
Sbjct 33339 TGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTTGACCTCGAAGATAC 33280
Query 7515 CTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574
| | |||||| | | | || ||||| || ||||||||||| || || || ||||| |
Sbjct 33279 CCTCCTCAATGGTCAGGAGAGACACATCGAAGGTACCACCACCAAGATCGAAGATGAGAA 33220
Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
|||| ||| | || ||||| || |||||||| || || || || || || || |
Sbjct 33219 CGTTGCGCTCGCCCTCGGCCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCGGTAGGCT 33160
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
| || || ||||| || ||| ||||| ||||| | || || || || || || |
Sbjct 33159 CGTTGATGATACGGAGGACGTTGAGGCCGGCAATGAGACCGGCGTCCTTGGTAGCCTGAC 33100
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
| || || ||||| |||||||| ||||| || || ||
Sbjct 33099 GCTGAGAGTCGTTGAAGTAGGCGGGGACAGTGACAAC 33063
>seq659
Length=26358
Score = 132 bits (146), Expect = 6e-26
Identities = 226/327 (69%), Gaps = 3/327 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||||||| || || || ||||| || ||| || |||| |||
Sbjct 25240 TCGAAATCCTCACCACCCAAGTGGGTGTCACCGGCGGTAGCCAGGACCTCGAAGACACCC 25299
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|| ||| | | |||||||| || ||||||||||| ||||| | | || |
Sbjct 25300 TGGTCGATGGACAGAAGAGAAACATCGAAAGTACCACCACCAAGGTCGTAGACGATGATC 25359
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| || |||| | |||| || |||||||| |||||||| || || || || ||
Sbjct 25360 TGGCGCTCACCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTCG 25416
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| | || || ||| ||| || || ||||| | ||||| || || || || ||
Sbjct 25417 TTGACAACGCGGAGAACGTTAAGTCCGGCAATGACACCGGCATCCTTGGTGGCCTGGCGC 25476
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| ||||| |||||||| ||||| || ||||| |||| || || ||||| || ||
Sbjct 25477 TGGTTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTGGGTAACCTTCTTGCCAAGG 25536
Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783
|| | || |||| || ||||| |||
Sbjct 25537 TAGGCCTCGGCGACCTCCTTCATCTTG 25563
>seq64
Length=120308
Score = 127 bits (140), Expect = 3e-24
Identities = 343/521 (66%), Gaps = 13/521 (2%)
Strand=Plus/Minus
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT---GGATGTATAGAAATCAACGCCGTCGTATAA 7299
||| ||||| ||||| |||||||| || || || ||| || |||| ||| | |
Sbjct 114929 CAGGTCCTCGAAACGAGCACGGGTGATCTGGGTGGTGTAG---TCCTCGCCATCGAAGAG 114873
Query 7300 CGAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357
|| || || ||||| || || || || || | || | || ||||| || |||||
Sbjct 114872 AGAGTCGATCTCAATAGTGGTCTGGGCACCGCTG--GAAAGGGTACGCTTGGCACGCTCG 114815
Query 7358 CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA 7417
|| || || || | ||| || |||||||| |||| || || | || ||||| ||
Sbjct 114814 CAAGCAGTACGGAGACGGCGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTG 114755
Query 7418 CGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477
|| | || || | | |||| || || | | ||||| || | ||| ||||||
Sbjct 114754 CGCTGGAAGTCCTTCTTGCAGTGGTCCAGAAGGTTGGTGTCGAAGTCCTGACCTCCCAAG 114695
Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537
|| || || || || || || ||||| |||| ||| || | ||||| | | ||
Sbjct 114694 TGGGTGTCACCAGCAGTGGCCTTGACGGTGAAGACACCACCCTGGATGTTAAGGAGGGAC 114635
Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTG 7594
||||| || ||||||||||||| ||| | ||||| ||||| || | | | |||
Sbjct 114634 ACATCGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTG 114575
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
| | |||||||| || || || || || || || || || || ||||| ||| |
Sbjct 114574 CCGGCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGAACG 114515
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| || || || || | | || || || || || || || || ||||| ||||||
Sbjct 114514 TTAAGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 114455
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| ||||| || | ||| || | | ||| ||||| || ||
Sbjct 114454 GCAGGGACGGTGATGACAGCCTTCTCGACCTTCTTGCCAAG 114414
>seq1932
Length=74184
Score = 86.0 bits (94), Expect = 8e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 104707 TAGATATTGGTCGTATACGGTTCGAAACACTCGTTGTTCCCTAAAATCTGGGATGTGGAT 104766
||||| |||| || || || ||||| ||||||||||| || || |||||||| |||||
Sbjct 59630 TAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAG 59571
Query 104767 GCGGTAGGCATAGGTGCAAGAAGAAGACTATT 104798
|| |||||||| || |||| ||| ||||| ||
Sbjct 59570 GCAGTAGGCATGGGAGCAACAAGCAGACTGTT 59539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635110760891840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |