Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1932 217 2e-51 seq1058 129 7e-25 >seq1932 Length=74184 Score = 217 bits (240), Expect = 2e-51 Identities = 897/1400 (64%), Gaps = 45/1400 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| |||| ||| || || ||| |||| || Sbjct 58252 CCGCAGCACATGATCATGCGTGTCGCAGTCGGCATCTGGGGTGACGATGTTGAGCGCGTC 58311 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || |||||| | | |||| |||||| | || || |||||| Sbjct 58312 ATTGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACACTCTTC 58371 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || ||| |||| || ||||| | | | ||||| || Sbjct 58372 AACGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGAC 58431 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || |||| ||| |||| || ||| ||||| ||| ||||||| Sbjct 58432 TCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGT 58491 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || || || | || ||| | || | |||| || |||| || || || Sbjct 58492 GGCATTGGTCTCAACGCCCACCGTATCCGTGCCACTGGCTCCTATATTGCCGGCACCAAC 58551 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || || | ||| | ||||| |||||||| || || ||| ||| || ||||| || Sbjct 58552 GGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTC 58611 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 |||| | ||| ||||| || | |||| |||| |||||||| |||||| Sbjct 58612 GACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGAGCCTTGGCAC 58668 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | |||||| | || ||||| ||||| || | ||||||| || ||| Sbjct 58669 GCCGATGTCTTTGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGC 58727 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || || || ||| ||| |||||||| || ||||| |||||||||||||| ||| ||| Sbjct 58728 TCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAA 58787 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 | | | ||| | ||| | ||||| || || ||||| || | || | || || Sbjct 58788 CGCCGAATGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGA 58847 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAG---AAAGTCGGGCGACTGCGAC 112258 |||||| || ||| | ||| ||||||||| |||| | |||| ||| | Sbjct 58848 GGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGCAAGACCATCAA 58907 Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 || |||| || | ||| | || || ||| || |||| || ||||| || | || Sbjct 58908 GG-CCCAGAAGC-----TTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCC 58961 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||||||||| |||||| |||| ||||| || || ||||| | || || Sbjct 58962 CTTCATGCTTTACAAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAACCTCGGAACCAT 59021 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 | || ||||| ||||| || || ||| | || | | | |||||| ||||| Sbjct 59022 CCGCAGCTCCAATCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAGGTTGCTGT 59081 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 112497 || ||| | || || | || || || | | || || | || || | | | | Sbjct 59082 ATGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAACGAGGGTGTC-TACG 59140 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 ||| | || || ||||| || || | || ||||| |||| | |||| Sbjct 59141 ATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTCCGCAACCTGAACAAGATCATTG 59200 Query 112558 ATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614 || || |||||||| |||| ||||| || || ||| | |||||||| | Sbjct 59201 ATGTCAACCACTACCCCGTTCCTGAG---GCTCGCAACAGCAACATGCGTCACCGTCCCA 59257 Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----TT 112669 | || || |||||||| ||||| || |||| | ||| ||| | | ||||| || Sbjct 59258 TCGGCCTTGGTGTCCAGGGTCTTGCTGATG----CCTTCCTTG-CCCTACGCATGCCTTT 59312 Query 112670 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729 || || || || || |||| | || || ||||| || || ||||| || Sbjct 59313 CGAGTCTCCTGAGGCTCGCGATCTCAACAAGAAGATTTTCGAGACCATCTACCACGCTGC 59372 Query 112730 TCTTGAGGCGAGTTCG--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787 || ||| | || || | |||| || || ||| | || || | ||||| Sbjct 59373 TC-TGA-CCATGTCCGTTCAACTGGCCAGGGAGGAGGGTACCTACTCCACGTACGAGGGC 59430 Query 112788 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC 112847 || || || || || | ||||| | || |||||| | | || || | | Sbjct 59431 TCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTC 59490 Query 112848 TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907 | ||||||||| |||| ||||| | |||||||| | ||| |||| |||||||| | Sbjct 59491 TGGGACTGGGACTCTCTGAAGGAGCAGATCAAGGAACACGGTGTTCGCAACAGTCTGCTT 59550 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 | || || ||||| || |||||||| | || |||||||| || || || ||||| || Sbjct 59551 GTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCGAG 59610 Query 112968 CCCTACACGACGAACATCTA 112987 |||||||| | |||||||| Sbjct 59611 CCCTACACTTCCAACATCTA 59630 >seq1058 Length=49244 Score = 129 bits (142), Expect = 7e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT-GATACAAAGTCGCGTTCCTTTGC 102178 |||| ||||| || || ||||| |||||||| | | || | | | |||||| || Sbjct 16580 ATTCGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGCTC-TTCCTTCGC 16522 Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238 |||| || | || || || ||| ||||||||||||||| ||| ||||| | | Sbjct 16521 CCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTC 16462 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || | |||||||||||||| ||||||||||| ||||| ||||||||||||||| || Sbjct 16461 CATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCAT 16402 Query 102299 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| ||||| ||||| |||||| || ||||| Sbjct 16401 CTCCCGTGATGAGGGTCTCCACACCGACTTTGC 16369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620720860238720