Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 217 2e-51
seq1058 129 7e-25
>seq1932
Length=74184
Score = 217 bits (240), Expect = 2e-51
Identities = 897/1400 (64%), Gaps = 45/1400 (3%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| ||||| |||| ||| || || ||| |||| ||
Sbjct 58252 CCGCAGCACATGATCATGCGTGTCGCAGTCGGCATCTGGGGTGACGATGTTGAGCGCGTC 58311
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| ||||| ||| || |||||| | | |||| |||||| | || || ||||||
Sbjct 58312 ATTGAGACCTACAACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACACTCTTC 58371
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||| ||||| || ||| |||| || ||||| | | | ||||| ||
Sbjct 58372 AACGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGAC 58431
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
|| || | || || |||| ||| |||| || ||| ||||| ||| |||||||
Sbjct 58432 TCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGT 58491
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911
|| || || | || ||| | || | |||| || |||| || || ||
Sbjct 58492 GGCATTGGTCTCAACGCCCACCGTATCCGTGCCACTGGCTCCTATATTGCCGGCACCAAC 58551
Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971
|| || | ||| | ||||| |||||||| || || ||| ||| || ||||| ||
Sbjct 58552 GGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTC 58611
Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025
|||| | ||| ||||| || | |||| |||| |||||||| ||||||
Sbjct 58612 GACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGAGCCTTGGCAC 58668
Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085
|| ||| || | |||||| | || ||||| ||||| || | ||||||| || |||
Sbjct 58669 GCCGATGTCTTTGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGC 58727
Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144
|| || || ||| ||| |||||||| || ||||| |||||||||||||| ||| |||
Sbjct 58728 TCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAA 58787
Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204
| | | ||| | ||| | ||||| || || ||||| || | || | || ||
Sbjct 58788 CGCCGAATGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGA 58847
Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAG---AAAGTCGGGCGACTGCGAC 112258
|||||| || ||| | ||| ||||||||| |||| | |||| ||| |
Sbjct 58848 GGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGCAAGACCATCAA 58907
Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318
|| |||| || | ||| | || || ||| || |||| || ||||| || | ||
Sbjct 58908 GG-CCCAGAAGC-----TTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCC 58961
Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378
| ||||||||||| |||||| |||| ||||| || || ||||| | || ||
Sbjct 58962 CTTCATGCTTTACAAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAACCTCGGAACCAT 59021
Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438
| || ||||| ||||| || || ||| | || | | | |||||| |||||
Sbjct 59022 CCGCAGCTCCAATCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAGGTTGCTGT 59081
Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 112497
|| ||| | || || | || || || | | || || | || || | | | |
Sbjct 59082 ATGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAACGAGGGTGTC-TACG 59140
Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557
||| | || || ||||| || || | || ||||| |||| | ||||
Sbjct 59141 ATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTCCGCAACCTGAACAAGATCATTG 59200
Query 112558 ATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614
|| || |||||||| |||| ||||| || || ||| | |||||||| |
Sbjct 59201 ATGTCAACCACTACCCCGTTCCTGAG---GCTCGCAACAGCAACATGCGTCACCGTCCCA 59257
Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----TT 112669
| || || |||||||| ||||| || |||| | ||| ||| | | ||||| ||
Sbjct 59258 TCGGCCTTGGTGTCCAGGGTCTTGCTGATG----CCTTCCTTG-CCCTACGCATGCCTTT 59312
Query 112670 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGC 112729
|| || || || || |||| | || || ||||| || || ||||| ||
Sbjct 59313 CGAGTCTCCTGAGGCTCGCGATCTCAACAAGAAGATTTTCGAGACCATCTACCACGCTGC 59372
Query 112730 TCTTGAGGCGAGTTCG--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787
|| ||| | || || | |||| || || ||| | || || | |||||
Sbjct 59373 TC-TGA-CCATGTCCGTTCAACTGGCCAGGGAGGAGGGTACCTACTCCACGTACGAGGGC 59430
Query 112788 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC 112847
|| || || || || | ||||| | || |||||| | | || || | |
Sbjct 59431 TCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTC 59490
Query 112848 TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907
| ||||||||| |||| ||||| | |||||||| | ||| |||| |||||||| |
Sbjct 59491 TGGGACTGGGACTCTCTGAAGGAGCAGATCAAGGAACACGGTGTTCGCAACAGTCTGCTT 59550
Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967
| || || ||||| || |||||||| | || |||||||| || || || ||||| ||
Sbjct 59551 GTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCGAG 59610
Query 112968 CCCTACACGACGAACATCTA 112987
|||||||| | ||||||||
Sbjct 59611 CCCTACACTTCCAACATCTA 59630
>seq1058
Length=49244
Score = 129 bits (142), Expect = 7e-25
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT-GATACAAAGTCGCGTTCCTTTGC 102178
|||| ||||| || || ||||| |||||||| | | || | | | |||||| ||
Sbjct 16580 ATTCGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGCTC-TTCCTTCGC 16522
Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238
|||| || | || || || ||| ||||||||||||||| ||| ||||| | |
Sbjct 16521 CCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTC 16462
Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298
|| | |||||||||||||| ||||||||||| ||||| ||||||||||||||| ||
Sbjct 16461 CATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCAT 16402
Query 102299 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||| ||||| ||||| |||||| || |||||
Sbjct 16401 CTCCCGTGATGAGGGTCTCCACACCGACTTTGC 16369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620720860238720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |