Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 196 6e-45
>seq1932
Length=74184
Score = 196 bits (216), Expect = 6e-45
Identities = 1076/1701 (63%), Gaps = 59/1701 (3%)
Strand=Plus/Minus
Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458
|||| || || || || ||||| ||||| ||||||||| |||||| | | ||||
Sbjct 59984 GCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATGC 59925
Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518
|| | || ||| | |||||| || ||| | ||| | ||||| |||||
Sbjct 59924 ATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGG 59865
Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTTCC 109575
|||||||| ||||||||| || ||||| | || | | | || || ||||||
Sbjct 59864 TCGATGAAGGCACCACGATCGGCAGCCATCTGGACAACGGTGCGCT---GGGAGATTTCC 59808
Query 109576 CAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635
||||| |||||||||| | ||||| || ||||||||| |||||| |||| ||
Sbjct 59807 CAGACGGTCTTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGA- 59749
Query 109636 CCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTG 109692
|||| || | |||| | | |||||| | | ||||| | || | | |
Sbjct 59748 --ACCATTCTCGGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACG 59691
Query 109693 AGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGG 109752
||||| | || || |||||| || || || || ||||| || || ||
Sbjct 59690 AGATCCTTAAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGG 59631
Query 109753 TAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAA 109812
|||||||| | |||||||| ||||| ||||| |||||||| | ||| || | ||||||
Sbjct 59630 TAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAG 59571
Query 109813 GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCA 109872
|| || ||||||||||| | || |||||||| || | ||| | ||| | | ||||
Sbjct 59570 GCAGTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCC 59511
Query 109873 CGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGT 109932
|| | |||||| || | | || | || ||| |||||| ||
Sbjct 59510 TTCAGAGAGTCCCAGTCCCAGAGGTCAGAG------GGCTTGACATTCCACATGTCGTAC 59457
Query 109933 TGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCG 109992
||||| | ||||| | ||| || |||| | | | ||| | ||||| || |
Sbjct 59456 TGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTG 59397
Query 109993 GCCAACT---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCA 110049
|||| | |||| | | || || || || || || ||||| ||||| |
Sbjct 59396 GCCAGTTGAACGGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAAATCTTC--- 59343
Query 110050 TTCATGAG---GCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCC 110106
|| |||| ||||| ||| | | ||||| || | | || || ||||
Sbjct 59342 TTGTTGAGATCGCGAGCCTCAGGAGACTCGAAAGGCATGCGTAGGGCAAGGAAGGCATCA 59283
Query 110107 GCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTT 110166
|| |||||||| ||||| || || ||||| || || |||||| | |||||
Sbjct 59282 GCAAGACCCTGGACACCAAGGCCGATGGGACGGTGACGCATGTTGCTGTTGCGAGCCTCA 59223
Query 110167 TCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTG 110226
|||||||| |||| || |||| | || || || || || |||
Sbjct 59222 GGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTG 59163
Query 110227 ATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACAT---ATTTGGGG 110283
| || || || || | | ||||| | | | ||| || | | || | | ||
Sbjct 59162 ACCTCGTGAAGCTTCTGGAAATCGTA-GACACC--CTCGTTGTAGTCAACGAAGGTAGGC 59106
Query 110284 AGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATT 110343
|| |||| ||| || | ||||| |||| | ||| || | || ||| || | ||
Sbjct 59105 AGGGCAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATC 59046
Query 110344 TCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTG 110403
|| || || | ||||| || ||| || | ||||||||| || ||| |||
Sbjct 59045 TCAGTGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTC 58986
Query 110404 CATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCC 110463
|| ||||| || |||||| | ||| | || || || ||||| | || ||| |||||
Sbjct 58985 GCGGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCG 58926
Query 110464 TTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTG 110520
| ||| | | || | ||| || || |||| | | ||||| |||||||||
Sbjct 58925 TACCAAAGCTTCTG-GGCCTTGATGGTCTTGCG--ACCCTTGCCTTCGCGCTCGTACTTC 58869
Query 110521 GTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGA 110580
||||||| |||| || |||| ||||| |||| || || || || ||||
Sbjct 58868 TCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGA 58809
Query 110581 CAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCAC 110640
|| | ||||| ||| | | || ||| || |||||||||||||| || || |||||
Sbjct 58808 CACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAG 58749
Query 110641 ATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCC 110700
| || |||||||||||| ||| |||| || | || ||||| ||| | |||
Sbjct 58748 AGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCC 58689
Query 110701 AAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGA 110760
| || || | || ||| | |||||| || || || |||| |||| || || | ||
Sbjct 58688 ATGAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACC---AGGA 58632
Query 110761 CG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814
|| || |||||| || ||||| || ||| |||||||| | ||||| |||
Sbjct 58631 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGA 58572
Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCG 110874
|| | || | || || || || || ||| ||| | ||||||| || |
Sbjct 58571 ATGACACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGG 58512
Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGT 110933
||| | | |||||| ||||| ||| ||| || || || ||| |||| ||
Sbjct 58511 TGGGCGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCT-TGAGGGT 58453
Query 110934 ACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTG 110993
| || ||||| ||||| || ||| |||| || | | || ||||| ||||||| |||
Sbjct 58452 GTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG 58393
Query 110994 AGGAC-GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG-- 111050
| || |||| || || || ||||||||||| || | || || ||| ||| ||||
Sbjct 58392 -GCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCT 58336
Query 111051 GGACATCTTGTTGTATGTGTC 111071
|||||| |||||| || ||
Sbjct 58335 GGACATGAGGTTGTAGGTCTC 58315
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588955562532800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |