Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq791 89.7 3e-13
seq1741 87.8 1e-12
>seq791
Length=44334
Score = 89.7 bits (98), Expect = 3e-13
Identities = 149/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || ||
Sbjct 42458 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 42517
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| |||||||| || || || || |||||||| | || | |||||||||||
Sbjct 42518 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 42577
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || | ||| || |||| ||| || ||
Sbjct 42578 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGT 42633
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| ||||| || ||||| || |||||||||||
Sbjct 42634 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666
>seq1741
Length=26822
Score = 87.8 bits (96), Expect = 1e-12
Identities = 142/202 (70%), Gaps = 8/202 (4%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||| | ||| || ||||||||||| ||||| || ||| | || |||| ||
Sbjct 16952 AACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCCTC 16893
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|| || || || ||||| || | || |||||||| | || | |||||||||||
Sbjct 16892 AAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 16833
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
||||||| ||||| || | ||||| ||| | ||| || || | ||| ||||
Sbjct 16832 AATCTTCGACTTGAC--AT--TGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGG 16777
Query 34948 TTTTTCCCGTGAGAGTCTTCAC 34969
| || || ||||| ||||| ||
Sbjct 16776 TCTTGCCAGTGAGGGTCTTGAC 16755
Score = 84.2 bits (92), Expect = 1e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838
|||| ||| ||| ||||| ||||| ||||| ||| | || |||| ||||||||
Sbjct 17173 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGC 17114
Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898
||||| || || || || || |||||||| | || | |||||||| || |||||
Sbjct 17113 TTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTG 17054
Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958
|| ||| | |||| || | ||| || || | || || || || || ||
Sbjct 17053 GACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAGTA 16994
Query 34959 AGAGTCTTCACAAAGATCTGCATA 34982
||||||||||| ||||||||||||
Sbjct 16993 AGAGTCTTCACGAAGATCTGCATA 16970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324622616833728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |