Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq791 89.7 3e-13 seq1741 87.8 1e-12 >seq791 Length=44334 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 42458 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 42517 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || || |||||||| | || | ||||||||||| Sbjct 42518 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 42577 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| || | ||| || |||| ||| || || Sbjct 42578 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGT 42633 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || ||||| || ||||||||||| Sbjct 42634 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666 >seq1741 Length=26822 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || ||||||||||| ||||| || ||| | || |||| || Sbjct 16952 AACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCCTC 16893 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || | || |||||||| | || | ||||||||||| Sbjct 16892 AAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 16833 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||||| ||||| || | ||||| ||| | ||| || || | ||| |||| Sbjct 16832 AATCTTCGACTTGAC--AT--TGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGG 16777 Query 34948 TTTTTCCCGTGAGAGTCTTCAC 34969 | || || ||||| ||||| || Sbjct 16776 TCTTGCCAGTGAGGGTCTTGAC 16755 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| ||| ||||| ||||| ||||| ||| | || |||| |||||||| Sbjct 17173 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGC 17114 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 ||||| || || || || || |||||||| | || | |||||||| || ||||| Sbjct 17113 TTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTG 17054 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 || ||| | |||| || | ||| || || | || || || || || || Sbjct 17053 GACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAGTA 16994 Query 34959 AGAGTCTTCACAAAGATCTGCATA 34982 ||||||||||| |||||||||||| Sbjct 16993 AGAGTCTTCACGAAGATCTGCATA 16970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324622616833728