Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1741 91.5 1e-12 >seq1741 Length=26822 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||||||||| ||||||||||| ||| || || ||||| || ||| || || | Sbjct 17188 AGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCG 17130 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| || || ||||| || || ||||| | ||||| || |||||||| || || Sbjct 17129 ACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTC 17070 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 ||||| || || || || || ||||| || || | ||| | | || | || Sbjct 17069 CTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTG-ATGACTCGACCTCCAAAG 17011 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| || || ||||||||||| || ||||| || |||||| Sbjct 17010 TAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCATA 16970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029149192600240