Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1741 91.5 1e-12
>seq1741
Length=26822
Score = 91.5 bits (100), Expect = 1e-12
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315
||||||||||| ||||||||||| ||| || || ||||| || ||| || || |
Sbjct 17188 AGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTC-GCTCAGGGTGCG 17130
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
|||||| || || ||||| || || ||||| | ||||| || |||||||| || ||
Sbjct 17129 ACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTC 17070
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434
||||| || || || || || ||||| || || | ||| | | || | ||
Sbjct 17069 CTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTG-ATGACTCGACCTCCAAAG 17011
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
||| || || ||||||||||| || ||||| || ||||||
Sbjct 17010 TAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCATA 16970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029149192600240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |