Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 385 9e-102
seq1058 165 2e-35
>seq1932
Length=74184
Score = 385 bits (426), Expect = 9e-102
Identities = 1150/1749 (66%), Gaps = 68/1749 (4%)
Strand=Plus/Minus
Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612
|| |||||||| | ||| ||| ||| |||| || || || ||||||||||| |||||
Sbjct 60011 ACGGTAAACTGAATAGGAGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 59952
Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668
|| || ||| |||||| | ||||| |||| ||| |||| | || |
Sbjct 59951 AGACCAAGCTT---CCAGCCAGCGAAATGCAT-GCTGGTGA---TCTTGCCC---ATTGT 59902
Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728
| |||| | | |||| | ||| |||||||| |||||| ||||| | |
Sbjct 59901 CGGGTCCTTCATGTGG---------ATGTTGAGGGACTGGGACTGGTCGATGAAGGCACC 59851
Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788
| || || ||||| | | | | |||||||| ||||| ||||||||| | |
Sbjct 59850 ACGATCGGCAGCCATCTGGACAACGGTGCGCTGGGAGATTTCCCAGACGGTCTTGTACAG 59791
Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845
| |||| || | || | | |||||||||||| || || || | | ||| |
Sbjct 59790 AGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGAACCATTCTCGGCAATGAT 59731
Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905
| | | |||| | ||| ||| | |||| || | || ||| | |||
Sbjct 59730 ACGGTTCTT---CATGGCATCGGACCATAAGCCCATGTCGACGAGATCCTTAAGCAGCCA 59674
Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965
|||||||| | |||||| || || | || || | | |||||| | ||| ||||||||
Sbjct 59673 GGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTA 59614
Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025
|||||||| || ||||||||| |||| ||||| | |||| ||| || |||||||||||
Sbjct 59613 GGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGC 59554
Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085
|| || |||||||| | || ||||| || ||| | | || || | ||||
Sbjct 59553 AACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTG-CTCCT----TCAGAG-AGTC 59500
Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145
||| | ||||| |||| | ||| || ||||||||||| |||| | ||| || |
Sbjct 59499 CCAG-TCCCAGA--GGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTG 59443
Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205
| | ||| ||||| ||| | |||||||| || | |||| ||||||| | |||
Sbjct 59442 GGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGA 59383
Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265
| ||| ||||||| ||||||||| || || |||| | ||||||| | |||||
Sbjct 59382 CATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCGAGCCTC 59323
Query 213266 TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325
|| ||| ||| ||||| | | |||| ||||||| || |||||||| || |
Sbjct 59322 AGGAGACTCGAAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAG 59263
Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384
||||||||| | ||| | || ||| ||| |||| ||| | |||||| ||||
Sbjct 59262 GCCGATGGGACGGTGACGCATGTTGCTGTTGCGAGC-CTCAGGAACGGGGTAGTGGTTGA 59204
Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444
|| ||||||||||| ||||||||| | || | ||||| | | || | || |
Sbjct 59203 CATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGCTTCTGGA 59144
Query 213445 GATTGAACACGTAGCCCCC--GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTT 213502
|| | | || | || | || | || || ||||||||| | ||||| |||
Sbjct 59143 AATCGTAGAC--ACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAGGCCAAGTT 59086
Query 213503 GCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCA 213562
||| || || ||||| | || | | |||||| |||||||| ||||| || ||| ||
Sbjct 59085 GCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGATTGGAGCT 59026
Query 213563 TCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCAT 213622
|||||||| || ||||||| ||||| ||| ||| || | |||||||| |||||
Sbjct 59025 GCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCAT 58966
Query 213623 GTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTT 213682
| ||||| |||||||| ||| | | | || || | ||| || | | ||||||
Sbjct 58965 GAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTT 58906
Query 213683 GACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATT 213741
|| | || | | | | | | || |||||||| ||||| | | | ||| |
Sbjct 58905 GATG----GTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACT 58850
Query 213742 CGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCC 213800
| | ||| || | | | |||| || || || ||||||||||||| |||| ||
Sbjct 58849 CCTCGCCGTAGCAGTCAG-CCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCATTCG 58791
Query 213801 CCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC 213859
|| || |||| |||||||| ||||||||| || |||| ||| || ||| ||| |||||
Sbjct 58790 GCGTTCTTCTC-GACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTC 58732
Query 213860 CCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTC 213919
| | | ||| ||| || ||| ||||||| || | || ||||||| ||
Sbjct 58731 ACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCAAAGACATC 58672
Query 213920 CGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTC 213976
|||||||| ||||| | ||||||||| ||||| || | || | ||||| ||||||||
Sbjct 58671 GGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTC 58612
Query 213977 CACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACT 214032
| | | || | || ||||||||| || || | ||| | | ||||| ||
Sbjct 58611 GA----CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGG 58556
Query 214033 GTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAGAGCCC 214090
|||||||| || || ||||| ||||| | ||| | | | || | | |||| ||
Sbjct 58555 TGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGA--CC 58498
Query 214091 TATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGC 214150
|||||||| || ||||||||||||||||||| | | | || || ||| || |
Sbjct 58497 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 58438
Query 214151 CATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCC 214210
||| ||| || | | || | | |||||| || |||||| | | | ||
Sbjct 58437 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 58378
Query 214211 AGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGT 214270
| |||||| || |||||| ||| ||| | | |||||| | || | ||| |||||||
Sbjct 58377 GGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 58318
Query 214271 CTCCAGGAC 214279
||| | |||
Sbjct 58317 CTCAATGAC 58309
>seq1058
Length=49244
Score = 165 bits (182), Expect = 2e-35
Identities = 345/508 (68%), Gaps = 17/508 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| | || | |||||||||||||| ||||| || | | |||||||||||
Sbjct 16077 CTGGTAGTCGGCAACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 16136
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957
||||||| |||||||||| | || || ||| |||| ||| | ||| |
Sbjct 16137 CATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCAACCAAGA 16195
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| | || || ||| |||||||||| | ||| | | || ||||||||| | ||| |
Sbjct 16196 GACGGTCGGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAG 16255
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
|||| ||||| || || ||||||| ||| |||| ||||| || | | ||| |
Sbjct 16256 CGCAAGGCAGAGCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAATGT 16315
Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT-AGAGCAT-----GC 48131
|| || | || ||| ||| | | |||||||| | |||| | ||
Sbjct 16316 CCTCAATG----AC-CTGC----TTGCTAGGGCGGTGCTTGAGGTGAGAGTACAAGAGGC 16366
Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191
|||||||||| |||| | || || || ||| ||||||| ||||||||||| ||||
Sbjct 16367 AGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGAC 16426
Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251
| ||||||| || | || ||||||||||| || | ||||| | || ||||||||
Sbjct 16427 CGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGA 16486
Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311
| ||||| || || ||||| || |||| || |||| |||| | | | ||| ||
Sbjct 16487 TACCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAGGAAGAGCTATCGTCGCTGA 16546
Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339
|||| | |||||||| ||||||||
Sbjct 16547 TCCACTTCAAGGCCCAGTCAGCCTTCTT 16574
Score = 91.5 bits (100), Expect = 3e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||||||||| | ||||| || ||||||||| ||||||||| | |||||| |
Sbjct 16717 TCTCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCAGGGA 16776
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
|||| ||||| |||||| | ||| | || ||||| ||||| || || || || || |
Sbjct 16777 CCTGGACTTCGCCGGAGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCGTCGGATGCGG 16836
Query 48549 CAAAGAAGGCAAGGA 48563
| |||||||||||||
Sbjct 16837 CGAAGAAGGCAAGGA 16851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931500475811840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |