Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1932 385 9e-102 seq1058 165 2e-35 >seq1932 Length=74184 Score = 385 bits (426), Expect = 9e-102 Identities = 1150/1749 (66%), Gaps = 68/1749 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || |||||||| | ||| ||| ||| |||| || || || ||||||||||| ||||| Sbjct 60011 ACGGTAAACTGAATAGGAGCAGAAGCTGCCTGCGTACGCAGGTAGTACATGCCCGTCTTG 59952 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| |||||| | ||||| |||| ||| |||| | || | Sbjct 59951 AGACCAAGCTT---CCAGCCAGCGAAATGCAT-GCTGGTGA---TCTTGCCC---ATTGT 59902 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 | |||| | | |||| | ||| |||||||| |||||| ||||| | | Sbjct 59901 CGGGTCCTTCATGTGG---------ATGTTGAGGGACTGGGACTGGTCGATGAAGGCACC 59851 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | || || ||||| | | | | |||||||| ||||| ||||||||| | | Sbjct 59850 ACGATCGGCAGCCATCTGGACAACGGTGCGCTGGGAGATTTCCCAGACGGTCTTGTACAG 59791 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845 | |||| || | || | | |||||||||||| || || || | | ||| | Sbjct 59790 AGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGAACCATTCTCGGCAATGAT 59731 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905 | | | |||| | ||| ||| | |||| || | || ||| | ||| Sbjct 59730 ACGGTTCTT---CATGGCATCGGACCATAAGCCCATGTCGACGAGATCCTTAAGCAGCCA 59674 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 |||||||| | |||||| || || | || || | | |||||| | ||| |||||||| Sbjct 59673 GGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTA 59614 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 |||||||| || ||||||||| |||| ||||| | |||| ||| || ||||||||||| Sbjct 59613 GGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGC 59554 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085 || || |||||||| | || ||||| || ||| | | || || | |||| Sbjct 59553 AACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTG-CTCCT----TCAGAG-AGTC 59500 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 ||| | ||||| |||| | ||| || ||||||||||| |||| | ||| || | Sbjct 59499 CCAG-TCCCAGA--GGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTG 59443 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 | | ||| ||||| ||| | |||||||| || | |||| ||||||| | ||| Sbjct 59442 GGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGA 59383 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 | ||| ||||||| ||||||||| || || |||| | ||||||| | ||||| Sbjct 59382 CATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCGAGCCTC 59323 Query 213266 TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325 || ||| ||| ||||| | | |||| ||||||| || |||||||| || | Sbjct 59322 AGGAGACTCGAAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAG 59263 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 ||||||||| | ||| | || ||| ||| |||| ||| | |||||| |||| Sbjct 59262 GCCGATGGGACGGTGACGCATGTTGCTGTTGCGAGC-CTCAGGAACGGGGTAGTGGTTGA 59204 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 || ||||||||||| ||||||||| | || | ||||| | | || | || | Sbjct 59203 CATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGCTTCTGGA 59144 Query 213445 GATTGAACACGTAGCCCCC--GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTT 213502 || | | || | || | || | || || ||||||||| | ||||| ||| Sbjct 59143 AATCGTAGAC--ACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAGGCCAAGTT 59086 Query 213503 GCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCA 213562 ||| || || ||||| | || | | |||||| |||||||| ||||| || ||| || Sbjct 59085 GCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGATTGGAGCT 59026 Query 213563 TCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCAT 213622 |||||||| || ||||||| ||||| ||| ||| || | |||||||| ||||| Sbjct 59025 GCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCAT 58966 Query 213623 GTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTT 213682 | ||||| |||||||| ||| | | | || || | ||| || | | |||||| Sbjct 58965 GAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTT 58906 Query 213683 GACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATT 213741 || | || | | | | | | || |||||||| ||||| | | | ||| | Sbjct 58905 GATG----GTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACT 58850 Query 213742 CGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCC 213800 | | ||| || | | | |||| || || || ||||||||||||| |||| || Sbjct 58849 CCTCGCCGTAGCAGTCAG-CCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCATTCG 58791 Query 213801 CCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC 213859 || || |||| |||||||| ||||||||| || |||| ||| || ||| ||| ||||| Sbjct 58790 GCGTTCTTCTC-GACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTC 58732 Query 213860 CCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTC 213919 | | | ||| ||| || ||| ||||||| || | || ||||||| || Sbjct 58731 ACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCAAAGACATC 58672 Query 213920 CGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTC 213976 |||||||| ||||| | ||||||||| ||||| || | || | ||||| |||||||| Sbjct 58671 GGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTC 58612 Query 213977 CACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACT 214032 | | | || | || ||||||||| || || | ||| | | ||||| || Sbjct 58611 GA----CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGG 58556 Query 214033 GTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAGAGCCC 214090 |||||||| || || ||||| ||||| | ||| | | | || | | |||| || Sbjct 58555 TGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGA--CC 58498 Query 214091 TATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGC 214150 |||||||| || ||||||||||||||||||| | | | || || ||| || | Sbjct 58497 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 58438 Query 214151 CATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCC 214210 ||| ||| || | | || | | |||||| || |||||| | | | || Sbjct 58437 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 58378 Query 214211 AGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGT 214270 | |||||| || |||||| ||| ||| | | |||||| | || | ||| ||||||| Sbjct 58377 GGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 58318 Query 214271 CTCCAGGAC 214279 ||| | ||| Sbjct 58317 CTCAATGAC 58309 >seq1058 Length=49244 Score = 165 bits (182), Expect = 2e-35 Identities = 345/508 (68%), Gaps = 17/508 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | |||||||||||||| ||||| || | | ||||||||||| Sbjct 16077 CTGGTAGTCGGCAACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 16136 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||||||| |||||||||| | || || ||| |||| ||| | ||| | Sbjct 16137 CATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCAACCAAGA 16195 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || || ||| |||||||||| | ||| | | || ||||||||| | ||| | Sbjct 16196 GACGGTCGGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAG 16255 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||| ||||| || || ||||||| ||| |||| ||||| || | | ||| | Sbjct 16256 CGCAAGGCAGAGCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAATGT 16315 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT-AGAGCAT-----GC 48131 || || | || ||| ||| | | |||||||| | |||| | || Sbjct 16316 CCTCAATG----AC-CTGC----TTGCTAGGGCGGTGCTTGAGGTGAGAGTACAAGAGGC 16366 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||||||||| |||| | || || || ||| ||||||| ||||||||||| |||| Sbjct 16367 AGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGAC 16426 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||||| || | || ||||||||||| || | ||||| | || |||||||| Sbjct 16427 CGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGA 16486 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || ||||| || |||| || |||| |||| | | | ||| || Sbjct 16487 TACCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAGGAAGAGCTATCGTCGCTGA 16546 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 |||| | |||||||| |||||||| Sbjct 16547 TCCACTTCAAGGCCCAGTCAGCCTTCTT 16574 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||||||||| | ||||| || ||||||||| ||||||||| | |||||| | Sbjct 16717 TCTCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCAGGGA 16776 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 |||| ||||| |||||| | ||| | || ||||| ||||| || || || || || | Sbjct 16777 CCTGGACTTCGCCGGAGAAGCGCTCAACGAGGTTCTCGTTGACGATGCCGTCGGATGCGG 16836 Query 48549 CAAAGAAGGCAAGGA 48563 | ||||||||||||| Sbjct 16837 CGAAGAAGGCAAGGA 16851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931500475811840