Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 277 3e-69
seq1058 172 1e-37
>seq1932
Length=74184
Score = 277 bits (306), Expect = 3e-69
Identities = 837/1279 (65%), Gaps = 49/1279 (4%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
||||| |||||||||||||||||||| || ||| |||||||||| || | ||||| ||
Sbjct 59378 GTCAGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGA-TCGCGAGCCTCAGG 59320
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| ||| ||||| || || | ||| | || || || ||||| || || | ||
Sbjct 59319 AGACTCGAAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAGGCC 59260
Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
|||||| | ||| | | ||||| | ||| || || || ||||| || ||||||
Sbjct 59259 GATGGGACGGTGACGCATGTTGCTGTTGCGA--GCCTCAGGAACGGGGTAGTGGTTGACA 59202
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
|| || | ||||| ||||| | | ||| | | |||||| ||||||||| |
Sbjct 59201 TCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAA 59142
Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713
| | | || |||| | ||| || || | || ||||||| |
Sbjct 59141 TCGTAGACACCCTCGTTGTAGTCAACGAAGGT--------AGGC----AGGGCAAGAGAG 59094
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|||| ||| || || || ||||| || | | |||| |||||||| || |||||
Sbjct 59093 GCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGA 59034
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||| || |||||| || |||| || || || |||||| || || |||||||||
Sbjct 59033 TTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTG 58974
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
|| ||||| ||||| ||| ||||| ||||||| | || || || ||| || | |
Sbjct 58973 TAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCT-T 58915
Query 221894 CTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATA 221946
|||| || | ||| | |||| || | | |||| ||| || ||| || |
Sbjct 58914 CTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTC 58855
Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006
|| ||| || ||||| || ||||||| || ||| | |||||||||
Sbjct 58854 GA---------ACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACAT 58804
Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066
|| |||| | ||| | | ||| |||| |||||| || || |||||||| || ||
Sbjct 58803 GAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGC 58744
Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126
| || || || | | || ||||||| ||||| ||| || | || |||| ||
Sbjct 58743 GAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAA 58684
Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186
|||||| | || |||||||| ||||| || |||| ||| | || || || ||||||||
Sbjct 58683 CTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTT 58624
Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245
||||||||| || | | | ||| | |||||||| ||||| | || | | |
Sbjct 58623 GCCACCCTGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACAC 58565
Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC---TGG 222302
|||| || ||||||||||| ||| || | || ||| | || ||| ||
Sbjct 58564 CGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCAC---GGATACGGTGGG 58508
Query 222303 CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362
| | || || ||||| || || ||||||||||||||| ||||||| |||||
Sbjct 58507 CGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGT 58448
Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422
||| ||||| || ||||| ||||| | || | || || || || |||| ||| | |
Sbjct 58447 AGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACT 58388
Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482
| || || |||||| || || ||||| |||||| || ||| | || ||||| |
Sbjct 58387 GAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGA 58328
Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTC 222541
| | ||| ||||| | ||| | | | | ||| ||| || | | | ||| | |
Sbjct 58327 GGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCG-ACTGCGACACGC 58269
Query 222542 ATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATT 222599
||| ||||| ||| || ||||| || || | ||||| |||||||| |||
Sbjct 58268 ATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCT--TCAGCAGGTATGATC 58211
Query 222600 TTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGG 222659
| ||||| || ||||| || ||||| | | || ||||| | | ||| || | ||| |
Sbjct 58210 TCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAG 58151
Query 222660 CGTCCAGCTCCGACTTGTG 222678
||| |||||| ||||||
Sbjct 58150 AGTCGAGCTCCTCCTTGTG 58132
Score = 102 bits (112), Expect = 2e-16
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || | | |||||| | ||| |||||| | ||
Sbjct 59670 GTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTAGGG 59611
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || |||||||||||||| |||||| | ||| ||| || |||||||| || ||
Sbjct 59610 CTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAAC 59551
Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACA 221295
|||||||||||||| | ||| | ||||| || |||| | || |||||| ||
Sbjct 59550 AAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCA 59491
Query 221296 G 221296
|
Sbjct 59490 G 59490
>seq1058
Length=49244
Score = 172 bits (190), Expect = 1e-37
Identities = 158/200 (79%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
|||||| |||||||||||| | | | ||| || | || | | |||||||||| |||||
Sbjct 16562 TGGGCCTTGAAGTGGATCAGCGACGATAGCTCTTCCTTCGCCCAGCGGCTGGTTGCCTTC 16503
Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953
|| ||||| ||||| ||||| ||||||||| | || || ||||||||||||||||| ||
Sbjct 16502 GCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAG 16443
Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013
|| ||||||||| ||| ||| ||||||||||||||| | | || |||||||||
Sbjct 16442 CGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTC 16383
Query 26014 CACAGAGATTTTGCCTGCCT 26033
|||| || |||||||||||
Sbjct 16382 CACACCGACTTTGCCTGCCT 16363
Score = 86.0 bits (94), Expect = 1e-11
Identities = 175/258 (68%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | ||||| ||||||||| | ||| ||||||||| || |||||||||||
Sbjct 16975 ATCTGGCAAATGTATAAGAAGGCTGAGGCCTCTTTCTGGACCGCTGAGGAGATTGATCTC 16916
Query 25537 GCCAAGGACATGGACGGCTGGTACG-CTCTATCCA--AAGACGAGCAGCATTTTCTCAAG 25593
||||||| | ||| |||| || | ||| | | || ||| || | || ||
Sbjct 16915 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 16856
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || ||||| || || || || || || || |||||||| || ||| |
Sbjct 16855 CACATCCTTGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGTTGAGCGC 16796
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
||| || | ||||| ||| | ||||| || ||||||||||||||||| ||
Sbjct 16795 TTCTCCGGCGAAGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATG 16736
Query 25714 GAAAATGTGCACTCTGAG 25731
|| || | |||||||||
Sbjct 16735 GAGAACATTCACTCTGAG 16718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928812569085440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |