Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1932 277 3e-69 seq1058 172 1e-37 >seq1932 Length=74184 Score = 277 bits (306), Expect = 3e-69 Identities = 837/1279 (65%), Gaps = 49/1279 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 ||||| |||||||||||||||||||| || ||| |||||||||| || | ||||| || Sbjct 59378 GTCAGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGA-TCGCGAGCCTCAGG 59320 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| ||||| || || | ||| | || || || ||||| || || | || Sbjct 59319 AGACTCGAAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAGGCC 59260 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 |||||| | ||| | | ||||| | ||| || || || ||||| || |||||| Sbjct 59259 GATGGGACGGTGACGCATGTTGCTGTTGCGA--GCCTCAGGAACGGGGTAGTGGTTGACA 59202 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 || || | ||||| ||||| | | ||| | | |||||| ||||||||| | Sbjct 59201 TCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAA 59142 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | | | || |||| | ||| || || | || ||||||| | Sbjct 59141 TCGTAGACACCCTCGTTGTAGTCAACGAAGGT--------AGGC----AGGGCAAGAGAG 59094 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||| ||| || || || ||||| || | | |||| |||||||| || ||||| Sbjct 59093 GCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGA 59034 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || |||||| || |||| || || || |||||| || || ||||||||| Sbjct 59033 TTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTG 58974 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| ||||| ||| ||||| ||||||| | || || || ||| || | | Sbjct 58973 TAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCT-T 58915 Query 221894 CTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATA 221946 |||| || | ||| | |||| || | | |||| ||| || ||| || | Sbjct 58914 CTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTC 58855 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 || ||| || ||||| || ||||||| || ||| | ||||||||| Sbjct 58854 GA---------ACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACAT 58804 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 || |||| | ||| | | ||| |||| |||||| || || |||||||| || || Sbjct 58803 GAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGC 58744 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || || || | | || ||||||| ||||| ||| || | || |||| || Sbjct 58743 GAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAA 58684 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 |||||| | || |||||||| ||||| || |||| ||| | || || || |||||||| Sbjct 58683 CTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTT 58624 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 ||||||||| || | | | ||| | |||||||| ||||| | || | | | Sbjct 58623 GCCACCCTGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACAC 58565 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC---TGG 222302 |||| || ||||||||||| ||| || | || ||| | || ||| || Sbjct 58564 CGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCAC---GGATACGGTGGG 58508 Query 222303 CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 | | || || ||||| || || ||||||||||||||| ||||||| ||||| Sbjct 58507 CGTTGAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGT 58448 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||| ||||| || ||||| ||||| | || | || || || || |||| ||| | | Sbjct 58447 AGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACT 58388 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 | || || |||||| || || ||||| |||||| || ||| | || ||||| | Sbjct 58387 GAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGA 58328 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTC 222541 | | ||| ||||| | ||| | | | | ||| ||| || | | | ||| | | Sbjct 58327 GGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCG-ACTGCGACACGC 58269 Query 222542 ATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATT 222599 ||| ||||| ||| || ||||| || || | ||||| |||||||| ||| Sbjct 58268 ATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCT--TCAGCAGGTATGATC 58211 Query 222600 TTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGG 222659 | ||||| || ||||| || ||||| | | || ||||| | | ||| || | ||| | Sbjct 58210 TCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAG 58151 Query 222660 CGTCCAGCTCCGACTTGTG 222678 ||| |||||| |||||| Sbjct 58150 AGTCGAGCTCCTCCTTGTG 58132 Score = 102 bits (112), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| |||||| | || Sbjct 59670 GTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTAGGG 59611 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||||| |||||| | ||| ||| || |||||||| || || Sbjct 59610 CTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAAC 59551 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACA 221295 |||||||||||||| | ||| | ||||| || |||| | || |||||| || Sbjct 59550 AAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCA 59491 Query 221296 G 221296 | Sbjct 59490 G 59490 >seq1058 Length=49244 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||| |||||||||||| | | | ||| || | || | | |||||||||| ||||| Sbjct 16562 TGGGCCTTGAAGTGGATCAGCGACGATAGCTCTTCCTTCGCCCAGCGGCTGGTTGCCTTC 16503 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 || ||||| ||||| ||||| ||||||||| | || || ||||||||||||||||| || Sbjct 16502 GCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAG 16443 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || ||||||||| ||| ||| ||||||||||||||| | | || ||||||||| Sbjct 16442 CGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTC 16383 Query 26014 CACAGAGATTTTGCCTGCCT 26033 |||| || ||||||||||| Sbjct 16382 CACACCGACTTTGCCTGCCT 16363 Score = 86.0 bits (94), Expect = 1e-11 Identities = 175/258 (68%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | ||||| ||||||||| | ||| ||||||||| || ||||||||||| Sbjct 16975 ATCTGGCAAATGTATAAGAAGGCTGAGGCCTCTTTCTGGACCGCTGAGGAGATTGATCTC 16916 Query 25537 GCCAAGGACATGGACGGCTGGTACG-CTCTATCCA--AAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| | | || ||| || | || || Sbjct 16915 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCT 16856 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || || || || || |||||||| || ||| | Sbjct 16855 CACATCCTTGCCTTCTTCGCCGCATCCGACGGCATCGTCAACGAGAACCTCGTTGAGCGC 16796 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| || | ||||| ||| | ||||| || ||||||||||||||||| || Sbjct 16795 TTCTCCGGCGAAGTCCAGGTCCCTGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATG 16736 Query 25714 GAAAATGTGCACTCTGAG 25731 || || | ||||||||| Sbjct 16735 GAGAACATTCACTCTGAG 16718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928812569085440