Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1741 96.9 2e-14
>seq1741
Length=26822
Score = 96.9 bits (106), Expect = 2e-14
Identities = 150/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
||||||||||| || | || || || || || || || || || | ||| ||
Sbjct 16963 CGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTG 16904
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | ||| ||||||||||| |||||||| || | ||| || || ||||| ||||| ||
Sbjct 16903 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCC 16844
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730
|||||||| |||||||| |||||| || || ||||||| | | | |||||
Sbjct 16843 TCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGA-CCTCAAG 16785
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
||| || || || || ||||| ||||| ||||
Sbjct 16784 GGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 16753
Score = 91.5 bits (100), Expect = 1e-12
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
||||||||||||||| |||||||| || ||| || | || || || ||| || |
Sbjct 17192 ACGAAGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTC-GCTCAGGG 17134
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | |||||| || ||||||||||| || |||||||| || || || |||||||| |
Sbjct 17133 TGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATAC 17074
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728
| ||||| || || ||||| || || ||||| || || | || | | | ||
Sbjct 17073 CCTCCTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCA 17014
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||||| || || || || |||||||| ||||| || ||
Sbjct 17013 A-AGTAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTG 16974
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268060123890848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |