Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1741 96.9 2e-14 >seq1741 Length=26822 Score = 96.9 bits (106), Expect = 2e-14 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || | || || || || || || || || || | ||| || Sbjct 16963 CGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTG 16904 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| ||||||||||| |||||||| || | ||| || || ||||| ||||| || Sbjct 16903 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCC 16844 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| |||||||| |||||| || || ||||||| | | | ||||| Sbjct 16843 TCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGA-CCTCAAG 16785 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 ||| || || || || ||||| ||||| |||| Sbjct 16784 GGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 16753 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||||||||||||||| |||||||| || ||| || | || || || ||| || | Sbjct 17192 ACGAAGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTC-GCTCAGGG 17134 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | |||||| || ||||||||||| || |||||||| || || || |||||||| | Sbjct 17133 TGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATAC 17074 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | ||||| || || ||||| || || ||||| || || | || | | | || Sbjct 17073 CCTCCTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCA 17014 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || || |||||||| ||||| || || Sbjct 17013 A-AGTAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTG 16974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268060123890848