Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 188 9e-43
seq1058 113 5e-20
>seq1932
Length=74184
Score = 188 bits (208), Expect = 9e-43
Identities = 945/1476 (64%), Gaps = 61/1476 (4%)
Strand=Plus/Plus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204
||||| ||| |||||||||| |||| || | || || | |||||| |||| |
Sbjct 58186 TACTTCGGTTTCAAAACCCTGGAGA-GATCATACCTGCTGAAGCTCGACGGCAAGATTGC 58244
Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264
|| | || ||| ||||| ||||||| |||||| |||||||| || || || ||||
Sbjct 58245 CGAGAGACCGCAGCACATGATCATGCGTGTCGCAGTCGGCATCTGGGGTGACGATGTTGA 58304
Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322
||| | ||||| ||| || |||||| |||| | | ||| ||||| | ||
Sbjct 58305 GCGCGTCATTGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCC 58362
Query 75323 ACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381
|| |||||||| || ||||| || || | ||| |||| |||||||| ||| ||
Sbjct 58363 ACACTCTTCAACGCCGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTTCCTCGTCGACAT 58421
Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 75441
||||| ||||| || | |||||||| | || || | | || || ||||| ||
Sbjct 58422 GAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAA 58481
Query 75442 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 75501
| |||||| || ||||| | || ||| | | | |||| | || ||||
Sbjct 58482 GATGGCTGGTGGCATTGGTCTCAACGCCCACCGTATCCGTGCCACTGGCTCCTATATTGC 58541
Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561
|| || || || || | ||| | ||||| |||||||| || || ||| ||| ||
Sbjct 58542 CGGCACCAACGGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGC 58601
Query 75562 GCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGA 75615
||||| || | || | || ||||| || || |||| ||||| | ||
Sbjct 58602 TCGCTACGTCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGA 58658
Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675
|| ||||| |||||| || | |||||| | || || || ||||| || | || ||
Sbjct 58659 GCCTTGGCACGCCGATGTCTTTGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGA 58718
Query 75676 GGCTCGGTG-TAGAGATCTCTTTTCATC--CCTGTGGATTCCAGACCTTTTCATGAAGCG 75732
|| || ||| | | || || |||| || ||| ||||| || || || ||||||||| |
Sbjct 58719 GG-TCCGTGCTCGTGACCT--TTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAG 58775
Query 75733 GGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA 75792
|| ||| || | ||||| | || | ||||| || || || || || | ||
Sbjct 58776 AGTCGAGAAGAACGCCGAATGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGA 58835
Query 75793 CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA-GAGGAGGGTAGAGCCA 75851
| || |||||||| || ||| | ||| ||||| || | | ||| || | |
Sbjct 58836 CTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTC- 58894
Query 75852 ATGC--GACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGA 75908
|| ||| | | || | | || | ||||| | || || ||| | | ||||| ||||
Sbjct 58895 --GCAAGACCAT-CAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGA 58951
Query 75909 CTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATT 75968
| || | || | |||||||||||||| || ||| ||||| ||||| |||||
Sbjct 58952 CCGGCAACCCCTTCATGCTTTACAAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAACC 59011
Query 75969 TGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATG 76028
| ||||| ||| ||||| ||||| ||||| || || | |||||| | ||||
Sbjct 59012 TCGGAACCATCCGCAGCTCCAATCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATG 59071
Query 76029 AGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT---ATGTCAATGAAGAGA 76085
|| ||||| ||||| ||||| || | ||||| || | | || | | | |||
Sbjct 59072 AGGTTGCTGTATGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAACGAGG 59131
Query 76086 CTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAA 76145
| | | |||| | || ||||| || |||| || | ||| | || || |
Sbjct 59132 GTGTC---TACGATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTCCGCAACCTGA 59188
Query 76146 ACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGC 76202
|| ||||||| || || ||||| |||| || ||| | || || ||||
Sbjct 59189 ACAAGATCATTGATGTCAACCACTACCCCGTTCCTGAGGCT-CGCAACAG--CAACATGC 59245
Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262
| ||| | || || || | ||||| || ||||| || |||| || | |||| ||
Sbjct 59246 GTCACCGTCCCATCGGCCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCT----TGCC-CT 59300
Query 76263 ACGCA-----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCAT 76317
||||| || || || ||| || || | || || || || |||||
Sbjct 59301 ACGCATGCCTTTCGAGTCTCCTGAGGCTCGCGATCTCAACAAGAAGATTTTCGAGACCAT 59360
Query 76318 GTATCACGCATCCCTG--GAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAG 76375
|| ||||| | ||| | | || | || |||| | | ||| ||||
Sbjct 59361 CTACCACGCTGCTCTGACCATGTCCGT--TCAACTGGCCAGGGAGGAGGGTACCTACTCC 59418
Query 76376 ACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAA 76435
|| | ||||| || || ||||| || | ||||||| || |||| |||| || ||
Sbjct 59419 ACGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGT-GGAATGTCAA 59477
Query 76436 ACCAAGCT--CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 76493
|| || | || |||||||| ||| ||||| | |||||||| | ||| |||
Sbjct 59478 GCC-CTCTGACCTCTGGGACTGGGACTCTCTGAAGGAGCAGATCAAGGAACACGGTGTTC 59536
Query 76494 GTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 76553
| |||||||| | | || || ||||| || |||||||| | || |||||||| || |
Sbjct 59537 GCAACAGTCTGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACA 59596
Query 76554 ATGAATGCTTTGAACCATACACAACAAACATCTACC 76589
| || ||||| || || ||||| | ||||||||||
Sbjct 59597 ACGAGTGCTTCGAGCCCTACACTTCCAACATCTACC 59632
>seq1058
Length=49244
Score = 113 bits (124), Expect = 5e-20
Identities = 122/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127
||||||||| |||| || |||| || || ||| ||||||||||||||| ||| |
Sbjct 16529 TCCTTCGCCCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCC 16470
Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187
||| | | || | ||| | |||||||| ||||||||||| || || |||||| ||
Sbjct 16469 TTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAAC 16410
Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || || ||||| ||||||||||||||| || ||||||
Sbjct 16409 GAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCC 16368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596548899034880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |