Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1932 188 9e-43 seq1058 113 5e-20 >seq1932 Length=74184 Score = 188 bits (208), Expect = 9e-43 Identities = 945/1476 (64%), Gaps = 61/1476 (4%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| ||| |||||||||| |||| || | || || | |||||| |||| | Sbjct 58186 TACTTCGGTTTCAAAACCCTGGAGA-GATCATACCTGCTGAAGCTCGACGGCAAGATTGC 58244 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || | || ||| ||||| ||||||| |||||| |||||||| || || || |||| Sbjct 58245 CGAGAGACCGCAGCACATGATCATGCGTGTCGCAGTCGGCATCTGGGGTGACGATGTTGA 58304 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 ||| | ||||| ||| || |||||| |||| | | ||| ||||| | || Sbjct 58305 GCGCGTCATTGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCC 58362 Query 75323 ACCCTCTTCAATGCTGGTACACCA-AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381 || |||||||| || ||||| || || | ||| |||| |||||||| ||| || Sbjct 58363 ACACTCTTCAACGCCGGTACCCCTCAGTGC-CAGCTGTCTTCATGCTTCCTCGTCGACAT 58421 Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 75441 ||||| ||||| || | |||||||| | || || | | || || ||||| || Sbjct 58422 GAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAA 58481 Query 75442 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCG 75501 | |||||| || ||||| | || ||| | | | |||| | || |||| Sbjct 58482 GATGGCTGGTGGCATTGGTCTCAACGCCCACCGTATCCGTGCCACTGGCTCCTATATTGC 58541 Query 75502 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 75561 || || || || || | ||| | ||||| |||||||| || || ||| ||| || Sbjct 58542 CGGCACCAACGGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGC 58601 Query 75562 GCGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGA 75615 ||||| || | || | || ||||| || || |||| ||||| | || Sbjct 58602 TCGCTACGTCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGA 58658 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| |||||| || | |||||| | || || || ||||| || | || || Sbjct 58659 GCCTTGGCACGCCGATGTCTTTGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGA 58718 Query 75676 GGCTCGGTG-TAGAGATCTCTTTTCATC--CCTGTGGATTCCAGACCTTTTCATGAAGCG 75732 || || ||| | | || || |||| || ||| ||||| || || || ||||||||| | Sbjct 58719 GG-TCCGTGCTCGTGACCT--TTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAG 58775 Query 75733 GGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA 75792 || ||| || | ||||| | || | ||||| || || || || || | || Sbjct 58776 AGTCGAGAAGAACGCCGAATGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGA 58835 Query 75793 CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA-GAGGAGGGTAGAGCCA 75851 | || |||||||| || ||| | ||| ||||| || | | ||| || | | Sbjct 58836 CTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTC- 58894 Query 75852 ATGC--GACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGA 75908 || ||| | | || | | || | ||||| | || || ||| | | ||||| |||| Sbjct 58895 --GCAAGACCAT-CAAGGCCCAGAAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGA 58951 Query 75909 CTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATT 75968 | || | || | |||||||||||||| || ||| ||||| ||||| ||||| Sbjct 58952 CCGGCAACCCCTTCATGCTTTACAAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAACC 59011 Query 75969 TGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATG 76028 | ||||| ||| ||||| ||||| ||||| || || | |||||| | |||| Sbjct 59012 TCGGAACCATCCGCAGCTCCAATCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATG 59071 Query 76029 AGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT---ATGTCAATGAAGAGA 76085 || ||||| ||||| ||||| || | ||||| || | | || | | | ||| Sbjct 59072 AGGTTGCTGTATGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAACGAGG 59131 Query 76086 CTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAA 76145 | | | |||| | || ||||| || |||| || | ||| | || || | Sbjct 59132 GTGTC---TACGATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTCCGCAACCTGA 59188 Query 76146 ACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGC 76202 || ||||||| || || ||||| |||| || ||| | || || |||| Sbjct 59189 ACAAGATCATTGATGTCAACCACTACCCCGTTCCTGAGGCT-CGCAACAG--CAACATGC 59245 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262 | ||| | || || || | ||||| || ||||| || |||| || | |||| || Sbjct 59246 GTCACCGTCCCATCGGCCTTGGTGTCCAGGGTCTTGCTGATGCCTTCCT----TGCC-CT 59300 Query 76263 ACGCA-----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCAT 76317 ||||| || || || ||| || || | || || || || ||||| Sbjct 59301 ACGCATGCCTTTCGAGTCTCCTGAGGCTCGCGATCTCAACAAGAAGATTTTCGAGACCAT 59360 Query 76318 GTATCACGCATCCCTG--GAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAG 76375 || ||||| | ||| | | || | || |||| | | ||| |||| Sbjct 59361 CTACCACGCTGCTCTGACCATGTCCGT--TCAACTGGCCAGGGAGGAGGGTACCTACTCC 59418 Query 76376 ACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAA 76435 || | ||||| || || ||||| || | ||||||| || |||| |||| || || Sbjct 59419 ACGTACGAGGGCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGT-GGAATGTCAA 59477 Query 76436 ACCAAGCT--CAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 76493 || || | || |||||||| ||| ||||| | |||||||| | ||| ||| Sbjct 59478 GCC-CTCTGACCTCTGGGACTGGGACTCTCTGAAGGAGCAGATCAAGGAACACGGTGTTC 59536 Query 76494 GTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 76553 | |||||||| | | || || ||||| || |||||||| | || |||||||| || | Sbjct 59537 GCAACAGTCTGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACA 59596 Query 76554 ATGAATGCTTTGAACCATACACAACAAACATCTACC 76589 | || ||||| || || ||||| | |||||||||| Sbjct 59597 ACGAGTGCTTCGAGCCCTACACTTCCAACATCTACC 59632 >seq1058 Length=49244 Score = 113 bits (124), Expect = 5e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||||||| |||| || |||| || || ||| ||||||||||||||| ||| | Sbjct 16529 TCCTTCGCCCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCC 16470 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||| | | || | ||| | |||||||| ||||||||||| || || |||||| || Sbjct 16469 TTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAAC 16410 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || ||||| ||||||||||||||| || |||||| Sbjct 16409 GAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCC 16368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596548899034880