Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq360 379 3e-100
seq791 172 7e-38
seq1741 161 1e-34
seq659 118 1e-21
seq146 100 4e-16
>seq360
Length=39165
Score = 379 bits (420), Expect = 3e-100
Identities = 790/1173 (67%), Gaps = 9/1173 (1%)
Strand=Plus/Plus
Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770
||||||| ||||| || || ||||||| || || || || ||||| || |||||||| |
Sbjct 33061 CAGTTGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCCG 33120
Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830
| ||||| || || ||| || | || ||||| || || || || ||||| ||||
Sbjct 33121 GTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCTGCCATTG 33180
Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890
| || ||||| |||||||| || | || || || | ||||| ||||| ||||
Sbjct 33181 CCTACGGTCTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTG 33240
Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950
||||||| || ||||| || || || | ||||| | ||||| ||||| || ||| | |
Sbjct 33241 GTGGTACCTTCGATGTGTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCA 33300
Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTG 196009
| |||||||| ||||| | |||||||| || ||||| ||||| | || || |
Sbjct 33301 CCGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTCG 33360
Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069
|| | |||||| || ||| | ||||| ||| | || || | | || || ||
Sbjct 33361 TC-AACGAGTTCAAACGCAAGCACAAGAAGGATCTGTCCTCCAACGCCCGTGCCCTGCGC 33419
Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATG 196129
|| ||| | || || || || |||||||| || || || || || | || || ||
Sbjct 33420 CGTCTTCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCC 33479
Query 196130 GTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGT 196189
| ||||| || || |||| || || || |||||||| || | || |||||||| ||
Sbjct 33480 ATCGAGATCGACTCTCTGTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGC 33539
Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249
|| || ||| | | || |||| | || | || || || | || ||
Sbjct 33540 TTCGAGGAGCTCTGCCAGGACCTGTTCCGCTCTACCATCCAGCCCGTCGACCGTGTCCTC 33599
Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309
||||| ||| | || ||||| |||| | || || ||||| || ||||| || |||
Sbjct 33600 ACCGACGCTAAGGTCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCACC 33659
Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAA 196369
||||| || |||| || | | || || ||||||| || || |||||
Sbjct 33660 CGTATCCCTCGTGTTCAGAAGCTCATCTCCGACTACTTCAATGGCAAGGAGCCCAACAAG 33719
Query 196370 ACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCA 196429
| |||||||| ||||| || ||||| || || || || || ||||| || ||||| ||
Sbjct 33720 TCCATCAACCCCGATGAGGCTGTTGCCTACGGCGCCGCTGTCCAGGCCGCCATTCTGTCC 33779
Query 196430 GGTG-----TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTAT 196484
|||| | | | | || | ||||| ||||| || || ||||| || | |
Sbjct 33780 GGTGACACCTCCTCCAAGAGTACCAACGAGATC--CTGCTTCTCGACGTTGCCCCTCTGT 33837
Query 196485 CCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTA 196544
|||| ||| | || || || ||||| | ||||| || | ||| | ||||| || |
Sbjct 33838 CCCTCGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATTCCCCGCAACACCACCA 33897
Query 196545 TTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATA 196604
|||| || |||||| | ||||| || || | ||||| || || || ||||| | |
Sbjct 33898 TTCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAGCCCGGTGTCCTCA 33957
Query 196605 TTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCG 196664
| || || || || || || ||| || | ||||| ||| | || || || | ||||
Sbjct 33958 TCCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTCGGCAAGTTCG 34017
Query 196665 ATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATA 196724
| | || || ||||| | || ||| | ||||| || |||||| | || ||||||
Sbjct 34018 AGCTTACCGGCATTCCCCCCGCCCCCCGCGGTGTCCCCCAGATTGAGGTCACCTTCGACC 34077
Query 196725 TAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAA 196784
| ||||| || ||||| | |||||| | |||| || |||| | | ||||| || | |
Sbjct 34078 TTGACGCCAACGGAATCATGAACGTCTCCGCTGTCGAGAAGGGTACCGGCAAGTCCAACA 34137
Query 196785 AGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTC 196844
||||||| || ||||| |||||||| || ||||| |||||||| ||||| || ||| ||
Sbjct 34138 AGATTGTCATCACCAACGACAAGGGCCGCCTTTCCAAGGAGGACATTGAGCGCATGCTTG 34197
Query 196845 AAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877
|| || || |||| || ||| || || ||||
Sbjct 34198 CTGAGGCCGAGAAGTTCAAGGATGAGGATGAGG 34230
>seq791
Length=44334
Score = 172 bits (190), Expect = 7e-38
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || ||||||||||||||||| ||||||||
Sbjct 42666 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 42607
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||||| || || ||||| || || || ||||| |||
Sbjct 42606 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 42547
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || || || || ||||| || || || || |||||| | || ||||||
Sbjct 42546 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 42487
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| || |||||||| || || ||||| || || | || || ||||||
Sbjct 42486 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 42439
>seq1741
Length=26822
Score = 161 bits (178), Expect = 1e-34
Identities = 158/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945
|| || || || ||||| |||||||| ||||| || || || ||||| ||| |||| |
Sbjct 16481 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACGTCAAGTCG 16540
Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005
|||||||| || ||||| ||||| || ||||||||||| || || ||||| ||||| ||
Sbjct 16541 AAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 16600
Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065
|| ||||| || || || |||||| | || |||||| | || ||||||||||| || |||
Sbjct 16601 CAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 16660
Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089
| ||||| | || || ||||||
Sbjct 16661 TTGGTTCTCCGCCTCCGTGGTGGT 16684
>seq659
Length=26358
Score = 118 bits (130), Expect = 1e-21
Identities = 783/1244 (63%), Gaps = 37/1244 (3%)
Strand=Plus/Minus
Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691
||||| || |||| | ||| | ||| |||||||||||| || || | | | |
Sbjct 25592 CCCGAGGAGGTTTCCGCCATGATCTTGGGCAAGATGAAGGAGGTCGCCGAGGCCTACCTT 25533
Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751
|| || | || | | || || || ||||| || || ||||||| || || ||
Sbjct 25532 GGCAAGAAGGTTACCCACGCCGTCGTCACTGTCCCCGCCTACTTCAACGACAACCAGCGC 25473
Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811
||||| || ||||| || | || ||||| || || ||| ||| | || |||| ||
Sbjct 25472 CAGGCCACCAAGGATGCCGGTGTCATTGCCGGACTTAACGTTCTCCGCGTTGTCAACGAG 25413
Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871
|| || || || || || || || ||||| ||||||| | | | || | | || |
Sbjct 25412 CCCACCGCCGCCGCTATCGCCTACGGTCTTGACAAGACCGACGGTGA-GCGCCAGATC-A 25355
Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931
| | ||| || || ||||||||||| || ||||| || ||||| || || |||
Sbjct 25354 TCG-TCTACGACCTTGGTGGTGGTACTTTCGATGTTTCTCTTCTGTCCATCGACCAGGGT 25296
Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA--TG 195989
| ||||| || |||||| || ||||| || || | |||||||| |||||||| |
Sbjct 25295 GTCTTCGAGGTCCTGGCTACCGCCGGTGACACCCACTTGGGTGGTGAGGATTTCGACCAG 25236
Query 195990 CACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGA---AAGATATTT 196046
| | || || | || || | | ||| | | ||||| || | |||||
Sbjct 25235 CGCATCATCAACTTC-TTCGCC----AAGTCCTATAACAAGAAGAACAGCGTCGATATCA 25181
Query 196047 C--TGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAAC 196104
| ||| || | ||| | || ||| | | || || || || || ||
Sbjct 25180 CCAAGGACCTC--AAGGCCATGGGTAAGCTCAAGCGTGAGGCCGAGAAGGCGAAGCGTAC 25123
Query 196105 TCTCTCTTCTACGGCTCAAACAATGG--TTGAGATTGATTCGTTGTTTGACGGAATTGAC 196162
|||||||| | | | || | | ||||||| || | || || || || | |||
Sbjct 25122 CCTCTCTTC-CCAGAT-GTCCACTCGCATTGAGATCGAGGCCTTCTTCGAGGGCAAGGAC 25065
Query 196163 TTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAG 196222
|||| ||| ||||||| || ||||| ||| | ||| ||| | || | ||||
Sbjct 25064 TTCTCCGAGACTCTTACCCGCGCCAAGTTTGAGGAGCTCAACATGGATCTCTTCAAGAAG 25005
Query 196223 TGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGAT 196282
| | || ||||| || || || ||||| ||| | | ||| | |||||
Sbjct 25004 ACCCTCAAGCCCGTTGAGCAGGTGCTCAAGGACGCCAAGGTCAAGAAGGAGGACGTTGAC 24945
Query 196283 GAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATT-----CAACAGATGCTTT 196337
|| || || || || || || || ||||||||||| ||| || | || ||
Sbjct 24944 GACATCGTTCTCGTTGGTGGCTCTACCCGTATTCCCAAGGTTGTCTCCCTCA-TTGAGGA 24886
Query 196338 CTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTT 196397
|| |||| | || || | || ||| |||||||| ||||| || || ||||
Sbjct 24885 GTA-CTTCAGCGGAAAGAAGGCTT---CCAAGGGTATCAACCCCGATGAGGCTGTCGCTT 24830
Query 196398 ATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATC 196457
||||| ||||||||||| | | | || || |||| || || | | | | |||
Sbjct 24829 TCGGTGCCGCCGTTCAGGCCGGTGTCCTTTCCGGTGAGGAGGGTACTGAGG----ACATC 24774
Query 196458 TTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGA 196517
|| || | || || ||| | | || ||| | || || | || ||||| ||||
Sbjct 24773 GTC--CTCATGGACGTCAACCCCTTGACTCTCGGTATCGAGACCACTGGAGGTGTCATGA 24716
Query 196518 CTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGT 196577
| || |||| | | ||||| | || || || ||| || |||| || ||
Sbjct 24715 CCAAGCTTATCCAGCGCAACACCCCCATCCCTACCCGCAAGAGCCAGATCTTCTCCACCG 24656
Query 196578 ATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAA 196637
|||| || || || | |||| || ||||| || || || || || |||| | | |
Sbjct 24655 CCGCCGACAACCAGCCCGTCGTTCTCATCCAAGTTTACGAGGGTGAGCGTTCCCTTACCA 24596
Query 196638 AGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTG 196697
|||| ||| |||| ||||| | ||||| | || || || || | || ||| | || |
Sbjct 24595 AGGACAACAATCTTCTTGGCAAGTTCGAGCTCACTGGCATCCCTCCCGCGCCCCGTGGCG 24536
Query 196698 TTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTG 196757
|||| ||| | | || | ||||| | || || || ||||| || || ||| | ||
Sbjct 24535 TTCCCCAGGTCGAGGTCTCTTTCGAGCTCGATGCCAACGGAATCCTCAAGGTCTCTGCCC 24476
Query 196758 AGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTT 196817
| ||||||| ||||||| || || |||||||| |||||||| || |||
Sbjct 24475 ACGACAAGGGAACTGGCAAGCAGGAGTCCATCACCATTACCAACGACAAGGGTCGTCTTA 24416
Query 196818 CTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTAC 196861
| |||| || ||||| || ||||| || || || ||||||
Sbjct 24415 CCCAGGATGAGATTGACCGCATGGTCGCCGAGGCTGAGAAGTAC 24372
>seq146
Length=27175
Score = 100 bits (110), Expect = 4e-16
Identities = 274/406 (67%), Gaps = 23/406 (6%)
Strand=Plus/Plus
Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608
||||| |||||||| | |||||||| | || || || ||||| || | || ||
Sbjct 25187 ATCCCTCGTGGTGCCATCCTCGCCGGACCTCCTGGAACCGGTAAGACGTTGCTTGCCAAG 25246
Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATC 198665
|| | ||| || || || |||| ||||| |||||| | || | || |||||| | ||
Sbjct 25247 GCCACCGCCGGCGAGTCCGGTGTGCCCTT-CTTCAGCG-TCAGTGGTTCCGAGTT-CGTC 25303
Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725
|||||||| || ||||||||| || | || || || | |||| | || ||| |
Sbjct 25304 GAGATGTTTGTCGGTGTTGGTCCTTCAAGAGTGCGAGACTTGTTTGCAAACGCTCGTAAG 25363
Query 198726 AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGG-----TAAGA-AGCGT 198779
| | || ||||||||||||||||||||||| ||||| |||| |||| ||
Sbjct 25364 AGTGCCCCCTGTATCATCTTCATTGATGAGATCGACGCCATTGGCCGATCAAGACAGGAA 25423
Query 198780 GGTGGAACTACTACACCTGGTAATGATGAGCGTG-AGCAGACGATTAACCAGCTTCTCAC 198838
||| ||| | | || || || || || | |||| || | |||||| | | ||
Sbjct 25424 GGT--AACCGC-ATGGGCGGCAACGACGAACGCGAAGCA-ACTCTGAACCAGATCTTGAC 25479
Query 198839 TGAGATGGATGGTTTTGACA---ATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAG 198895
|||||||| ||||| ||| | ||| | || |||| || | |||| || || ||
Sbjct 25480 CGAGATGGACGGTTTCAACACCCAAGAG-CAGG--TCGTTGTCCTCGCTGGCACCAACAG 25536
Query 198896 GATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGAC 198941
||||| || || | || ||| | ||||||||||| ||||||
Sbjct 25537 AGCCGATATTCTTGACAAGGCGCTGATGCGTCCCGGTCGTTTCGAC 25582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657839572174720
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