Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq360 379 3e-100 seq791 172 7e-38 seq1741 161 1e-34 seq659 118 1e-21 seq146 100 4e-16 >seq360 Length=39165 Score = 379 bits (420), Expect = 3e-100 Identities = 790/1173 (67%), Gaps = 9/1173 (1%) Strand=Plus/Plus Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770 ||||||| ||||| || || ||||||| || || || || ||||| || |||||||| | Sbjct 33061 CAGTTGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCCG 33120 Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830 | ||||| || || ||| || | || ||||| || || || || ||||| |||| Sbjct 33121 GTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCTGCCATTG 33180 Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | || ||||| |||||||| || | || || || | ||||| ||||| |||| Sbjct 33181 CCTACGGTCTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTG 33240 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 ||||||| || ||||| || || || | ||||| | ||||| ||||| || ||| | | Sbjct 33241 GTGGTACCTTCGATGTGTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCA 33300 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTG 196009 | |||||||| ||||| | |||||||| || ||||| ||||| | || || | Sbjct 33301 CCGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTCG 33360 Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069 || | |||||| || ||| | ||||| ||| | || || | | || || || Sbjct 33361 TC-AACGAGTTCAAACGCAAGCACAAGAAGGATCTGTCCTCCAACGCCCGTGCCCTGCGC 33419 Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATG 196129 || ||| | || || || || |||||||| || || || || || | || || || Sbjct 33420 CGTCTTCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCC 33479 Query 196130 GTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGT 196189 | ||||| || || |||| || || || |||||||| || | || |||||||| || Sbjct 33480 ATCGAGATCGACTCTCTGTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGC 33539 Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 || || ||| | | || |||| | || | || || || | || || Sbjct 33540 TTCGAGGAGCTCTGCCAGGACCTGTTCCGCTCTACCATCCAGCCCGTCGACCGTGTCCTC 33599 Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 ||||| ||| | || ||||| |||| | || || ||||| || ||||| || ||| Sbjct 33600 ACCGACGCTAAGGTCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCACC 33659 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAA 196369 ||||| || |||| || | | || || ||||||| || || ||||| Sbjct 33660 CGTATCCCTCGTGTTCAGAAGCTCATCTCCGACTACTTCAATGGCAAGGAGCCCAACAAG 33719 Query 196370 ACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCA 196429 | |||||||| ||||| || ||||| || || || || || ||||| || ||||| || Sbjct 33720 TCCATCAACCCCGATGAGGCTGTTGCCTACGGCGCCGCTGTCCAGGCCGCCATTCTGTCC 33779 Query 196430 GGTG-----TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTAT 196484 |||| | | | | || | ||||| ||||| || || ||||| || | | Sbjct 33780 GGTGACACCTCCTCCAAGAGTACCAACGAGATC--CTGCTTCTCGACGTTGCCCCTCTGT 33837 Query 196485 CCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTA 196544 |||| ||| | || || || ||||| | ||||| || | ||| | ||||| || | Sbjct 33838 CCCTCGGTATCGAGACTGCTGGTGGCATGATGACCAAGCTCATTCCCCGCAACACCACCA 33897 Query 196545 TTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATA 196604 |||| || |||||| | ||||| || || | ||||| || || || ||||| | | Sbjct 33898 TTCCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAGCCCGGTGTCCTCA 33957 Query 196605 TTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCG 196664 | || || || || || || ||| || | ||||| ||| | || || || | |||| Sbjct 33958 TCCAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTCGGCAAGTTCG 34017 Query 196665 ATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATA 196724 | | || || ||||| | || ||| | ||||| || |||||| | || |||||| Sbjct 34018 AGCTTACCGGCATTCCCCCCGCCCCCCGCGGTGTCCCCCAGATTGAGGTCACCTTCGACC 34077 Query 196725 TAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAA 196784 | ||||| || ||||| | |||||| | |||| || |||| | | ||||| || | | Sbjct 34078 TTGACGCCAACGGAATCATGAACGTCTCCGCTGTCGAGAAGGGTACCGGCAAGTCCAACA 34137 Query 196785 AGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTC 196844 ||||||| || ||||| |||||||| || ||||| |||||||| ||||| || ||| || Sbjct 34138 AGATTGTCATCACCAACGACAAGGGCCGCCTTTCCAAGGAGGACATTGAGCGCATGCTTG 34197 Query 196845 AAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || || || |||| || ||| || || |||| Sbjct 34198 CTGAGGCCGAGAAGTTCAAGGATGAGGATGAGG 34230 >seq791 Length=44334 Score = 172 bits (190), Expect = 7e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||||||||| |||||||| Sbjct 42666 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 42607 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| || || || ||||| ||| Sbjct 42606 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 42547 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || |||||| | || |||||| Sbjct 42546 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 42487 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| || || | || || |||||| Sbjct 42486 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 42439 >seq1741 Length=26822 Score = 161 bits (178), Expect = 1e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || ||||| |||||||| ||||| || || || ||||| ||| |||| | Sbjct 16481 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACGTCAAGTCG 16540 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 |||||||| || ||||| ||||| || ||||||||||| || || ||||| ||||| || Sbjct 16541 AAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 16600 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 || ||||| || || || |||||| | || |||||| | || ||||||||||| || ||| Sbjct 16601 CAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 16660 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 | ||||| | || || |||||| Sbjct 16661 TTGGTTCTCCGCCTCCGTGGTGGT 16684 >seq659 Length=26358 Score = 118 bits (130), Expect = 1e-21 Identities = 783/1244 (63%), Gaps = 37/1244 (3%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || |||| | ||| | ||| |||||||||||| || || | | | | Sbjct 25592 CCCGAGGAGGTTTCCGCCATGATCTTGGGCAAGATGAAGGAGGTCGCCGAGGCCTACCTT 25533 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || | || | | || || || ||||| || || ||||||| || || || Sbjct 25532 GGCAAGAAGGTTACCCACGCCGTCGTCACTGTCCCCGCCTACTTCAACGACAACCAGCGC 25473 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 ||||| || ||||| || | || ||||| || || ||| ||| | || |||| || Sbjct 25472 CAGGCCACCAAGGATGCCGGTGTCATTGCCGGACTTAACGTTCTCCGCGTTGTCAACGAG 25413 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || || || || ||||| ||||||| | | | || | | || | Sbjct 25412 CCCACCGCCGCCGCTATCGCCTACGGTCTTGACAAGACCGACGGTGA-GCGCCAGATC-A 25355 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | | ||| || || ||||||||||| || ||||| || ||||| || || ||| Sbjct 25354 TCG-TCTACGACCTTGGTGGTGGTACTTTCGATGTTTCTCTTCTGTCCATCGACCAGGGT 25296 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA--TG 195989 | ||||| || |||||| || ||||| || || | |||||||| |||||||| | Sbjct 25295 GTCTTCGAGGTCCTGGCTACCGCCGGTGACACCCACTTGGGTGGTGAGGATTTCGACCAG 25236 Query 195990 CACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGA---AAGATATTT 196046 | | || || | || || | | ||| | | ||||| || | ||||| Sbjct 25235 CGCATCATCAACTTC-TTCGCC----AAGTCCTATAACAAGAAGAACAGCGTCGATATCA 25181 Query 196047 C--TGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAAC 196104 | ||| || | ||| | || ||| | | || || || || || || Sbjct 25180 CCAAGGACCTC--AAGGCCATGGGTAAGCTCAAGCGTGAGGCCGAGAAGGCGAAGCGTAC 25123 Query 196105 TCTCTCTTCTACGGCTCAAACAATGG--TTGAGATTGATTCGTTGTTTGACGGAATTGAC 196162 |||||||| | | | || | | ||||||| || | || || || || | ||| Sbjct 25122 CCTCTCTTC-CCAGAT-GTCCACTCGCATTGAGATCGAGGCCTTCTTCGAGGGCAAGGAC 25065 Query 196163 TTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAG 196222 |||| ||| ||||||| || ||||| ||| | ||| ||| | || | |||| Sbjct 25064 TTCTCCGAGACTCTTACCCGCGCCAAGTTTGAGGAGCTCAACATGGATCTCTTCAAGAAG 25005 Query 196223 TGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGAT 196282 | | || ||||| || || || ||||| ||| | | ||| | ||||| Sbjct 25004 ACCCTCAAGCCCGTTGAGCAGGTGCTCAAGGACGCCAAGGTCAAGAAGGAGGACGTTGAC 24945 Query 196283 GAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATT-----CAACAGATGCTTT 196337 || || || || || || || || ||||||||||| ||| || | || || Sbjct 24944 GACATCGTTCTCGTTGGTGGCTCTACCCGTATTCCCAAGGTTGTCTCCCTCA-TTGAGGA 24886 Query 196338 CTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTT 196397 || |||| | || || | || ||| |||||||| ||||| || || |||| Sbjct 24885 GTA-CTTCAGCGGAAAGAAGGCTT---CCAAGGGTATCAACCCCGATGAGGCTGTCGCTT 24830 Query 196398 ATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATC 196457 ||||| ||||||||||| | | | || || |||| || || | | | | ||| Sbjct 24829 TCGGTGCCGCCGTTCAGGCCGGTGTCCTTTCCGGTGAGGAGGGTACTGAGG----ACATC 24774 Query 196458 TTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGA 196517 || || | || || ||| | | || ||| | || || | || ||||| |||| Sbjct 24773 GTC--CTCATGGACGTCAACCCCTTGACTCTCGGTATCGAGACCACTGGAGGTGTCATGA 24716 Query 196518 CTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGT 196577 | || |||| | | ||||| | || || || ||| || |||| || || Sbjct 24715 CCAAGCTTATCCAGCGCAACACCCCCATCCCTACCCGCAAGAGCCAGATCTTCTCCACCG 24656 Query 196578 ATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAA 196637 |||| || || || | |||| || ||||| || || || || || |||| | | | Sbjct 24655 CCGCCGACAACCAGCCCGTCGTTCTCATCCAAGTTTACGAGGGTGAGCGTTCCCTTACCA 24596 Query 196638 AGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTG 196697 |||| ||| |||| ||||| | ||||| | || || || || | || ||| | || | Sbjct 24595 AGGACAACAATCTTCTTGGCAAGTTCGAGCTCACTGGCATCCCTCCCGCGCCCCGTGGCG 24536 Query 196698 TTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTG 196757 |||| ||| | | || | ||||| | || || || ||||| || || ||| | || Sbjct 24535 TTCCCCAGGTCGAGGTCTCTTTCGAGCTCGATGCCAACGGAATCCTCAAGGTCTCTGCCC 24476 Query 196758 AGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTT 196817 | ||||||| ||||||| || || |||||||| |||||||| || ||| Sbjct 24475 ACGACAAGGGAACTGGCAAGCAGGAGTCCATCACCATTACCAACGACAAGGGTCGTCTTA 24416 Query 196818 CTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTAC 196861 | |||| || ||||| || ||||| || || || |||||| Sbjct 24415 CCCAGGATGAGATTGACCGCATGGTCGCCGAGGCTGAGAAGTAC 24372 >seq146 Length=27175 Score = 100 bits (110), Expect = 4e-16 Identities = 274/406 (67%), Gaps = 23/406 (6%) Strand=Plus/Plus Query 198549 ATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTTCTAGCTCGT 198608 ||||| |||||||| | |||||||| | || || || ||||| || | || || Sbjct 25187 ATCCCTCGTGGTGCCATCCTCGCCGGACCTCCTGGAACCGGTAAGACGTTGCTTGCCAAG 25246 Query 198609 GCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CGAGTTTCATC 198665 || | ||| || || || |||| ||||| |||||| | || | || |||||| | || Sbjct 25247 GCCACCGCCGGCGAGTCCGGTGTGCCCTT-CTTCAGCG-TCAGTGGTTCCGAGTT-CGTC 25303 Query 198666 GAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAAGCACGTGAA 198725 |||||||| || ||||||||| || | || || || | |||| | || ||| | Sbjct 25304 GAGATGTTTGTCGGTGTTGGTCCTTCAAGAGTGCGAGACTTGTTTGCAAACGCTCGTAAG 25363 Query 198726 AATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGG-----TAAGA-AGCGT 198779 | | || ||||||||||||||||||||||| ||||| |||| |||| || Sbjct 25364 AGTGCCCCCTGTATCATCTTCATTGATGAGATCGACGCCATTGGCCGATCAAGACAGGAA 25423 Query 198780 GGTGGAACTACTACACCTGGTAATGATGAGCGTG-AGCAGACGATTAACCAGCTTCTCAC 198838 ||| ||| | | || || || || || | |||| || | |||||| | | || Sbjct 25424 GGT--AACCGC-ATGGGCGGCAACGACGAACGCGAAGCA-ACTCTGAACCAGATCTTGAC 25479 Query 198839 TGAGATGGATGGTTTTGACA---ATGAGACTGGTATCGTGGTGATTGCTGCTACAAATAG 198895 |||||||| ||||| ||| | ||| | || |||| || | |||| || || || Sbjct 25480 CGAGATGGACGGTTTCAACACCCAAGAG-CAGG--TCGTTGTCCTCGCTGGCACCAACAG 25536 Query 198896 GATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGAC 198941 ||||| || || | || ||| | ||||||||||| |||||| Sbjct 25537 AGCCGATATTCTTGACAAGGCGCTGATGCGTCCCGGTCGTTTCGAC 25582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657839572174720