Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq633 134 4e-26
seq1932 100 8e-16
>seq633
Length=60298
Score = 134 bits (148), Expect = 4e-26
Identities = 191/265 (72%), Gaps = 8/265 (3%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||||||||| || ||||| || | || || ||||| ||||| || |
Sbjct 52215 CTTGACGAGACGACGCTGGATGTAACCTGTCTCGGCGGTCTTGACAGCGGTATCGATCAA 52156
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCCCCCAATAA 302701
||| | | |||| |||| || |||||||| | ||| | || |||| | || | | |
Sbjct 52155 ACCTTCTCTACCAGCCATGGCGTGGAAGAAGAACTCG-CTGGGCGTAAGACCACGGAGAT 52097
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| ||| |||||||||||||||| |||||||| || | |||| ||| || ||||| ||||
Sbjct 52096 ACGAGTTCTCAACGAAACCACGAGCCTCGGGTGAGTAGTCGTCCTTTGTGAAGTGCGGCA 52037
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCA 302818
|||| | || | ||||| | || ||||||||||| || || | ||||||| |||
Sbjct 52036 GGGTGCGGTATTTGAAGCCGAAAGGAATACGCTTTCCTTCGACAATTTGCTGTCCGACCA 51977
Query 302819 GGCACGAAATCATCTGCGAAATATT 302843
|| | | ||||||| ||||| ||
Sbjct 51976 GG---GCAGTCATCTGGGAAATGTT 51955
>seq1932
Length=74184
Score = 100 bits (110), Expect = 8e-16
Identities = 372/581 (64%), Gaps = 13/581 (2%)
Strand=Plus/Minus
Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646
||| ||| |||| || ||||| ||| ||| | | ||| ||| || | ||||||
Sbjct 59101 CAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAG 59042
Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706
||| || || || || |||||| || | ||||||||||| || | ||| |
Sbjct 59041 TGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGG 58982
Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766
| |||||||| || ||| | ||| | || ||||| |||| || || || || ||
Sbjct 58981 CGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACC 58922
Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACA 155826
| || | |||| || || |||| ||||||| ||| || ||| ||||
Sbjct 58921 AAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACA 58862
Query 155827 GCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886
| | | ||||| ||||| || ||| ||| || ||||||| | ||| || | |
Sbjct 58861 AGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGA 58802
Query 155887 GCGACCAAATT-----TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAAT 155941
| | ||| || || || ||| | | || ||| || | ||| ||| |
Sbjct 58801 GGGTCCA--TTCGGCGTTCTTCTCGACT---CTCTTCATGAACAGATCGGGGATCCAGAG 58747
Query 155942 AGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAA 156001
|| ||||||||| | || |||||| | |||||| ||||| || | || |
Sbjct 58746 GGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCAT 58687
Query 156002 GAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT 156061
||| || | ||| | || ||||| || || || || || |||| | |||
Sbjct 58686 GAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTT 58627
Query 156062 G---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAAT 156118
| |||||||| || || || |||||||| || |||||||||| ||||| ||||| |
Sbjct 58626 GTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGAC 58567
Query 156119 ACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159
||| || || ||||| ||||| ||| ||||| || ||||
Sbjct 58566 ACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAG 58526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471765251127512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |