Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq633 134 4e-26 seq1932 100 8e-16 >seq633 Length=60298 Score = 134 bits (148), Expect = 4e-26 Identities = 191/265 (72%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||||||||| || ||||| || | || || ||||| ||||| || | Sbjct 52215 CTTGACGAGACGACGCTGGATGTAACCTGTCTCGGCGGTCTTGACAGCGGTATCGATCAA 52156 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCCCCCAATAA 302701 ||| | | |||| |||| || |||||||| | ||| | || |||| | || | | | Sbjct 52155 ACCTTCTCTACCAGCCATGGCGTGGAAGAAGAACTCG-CTGGGCGTAAGACCACGGAGAT 52097 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| |||||||||||||||| |||||||| || | |||| ||| || ||||| |||| Sbjct 52096 ACGAGTTCTCAACGAAACCACGAGCCTCGGGTGAGTAGTCGTCCTTTGTGAAGTGCGGCA 52037 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTC---CCA 302818 |||| | || | ||||| | || ||||||||||| || || | ||||||| ||| Sbjct 52036 GGGTGCGGTATTTGAAGCCGAAAGGAATACGCTTTCCTTCGACAATTTGCTGTCCGACCA 51977 Query 302819 GGCACGAAATCATCTGCGAAATATT 302843 || | | ||||||| ||||| || Sbjct 51976 GG---GCAGTCATCTGGGAAATGTT 51955 >seq1932 Length=74184 Score = 100 bits (110), Expect = 8e-16 Identities = 372/581 (64%), Gaps = 13/581 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||| ||| |||| || ||||| ||| ||| | | ||| ||| || | |||||| Sbjct 59101 CAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAG 59042 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 ||| || || || || |||||| || | ||||||||||| || | ||| | Sbjct 59041 TGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGG 58982 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 | |||||||| || ||| | ||| | || ||||| |||| || || || || || Sbjct 58981 CGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACC 58922 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACA 155826 | || | |||| || || |||| ||||||| ||| || ||| |||| Sbjct 58921 AAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACA 58862 Query 155827 GCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886 | | | ||||| ||||| || ||| ||| || ||||||| | ||| || | | Sbjct 58861 AGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGA 58802 Query 155887 GCGACCAAATT-----TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAAT 155941 | | ||| || || || ||| | | || ||| || | ||| ||| | Sbjct 58801 GGGTCCA--TTCGGCGTTCTTCTCGACT---CTCTTCATGAACAGATCGGGGATCCAGAG 58747 Query 155942 AGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAA 156001 || ||||||||| | || |||||| | |||||| ||||| || | || | Sbjct 58746 GGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCAT 58687 Query 156002 GAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT 156061 ||| || | ||| | || ||||| || || || || || |||| | ||| Sbjct 58686 GAACTCAAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTT 58627 Query 156062 G---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAAT 156118 | |||||||| || || || |||||||| || |||||||||| ||||| ||||| | Sbjct 58626 GTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGAC 58567 Query 156119 ACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAG 156159 ||| || || ||||| ||||| ||| ||||| || |||| Sbjct 58566 ACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAG 58526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471765251127512