Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq2627 188 9e-42
seq1932 183 4e-40
seq1701 141 1e-27
seq1776 140 4e-27
seq1058 120 4e-21
seq1527 96.9 4e-14
seq682 91.5 2e-12
>seq2627
Length=11159
Score = 188 bits (208), Expect = 9e-42
Identities = 275/389 (71%), Gaps = 6/389 (2%)
Strand=Plus/Minus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||||||| ||| |||| ||||| ||||| ||||| |
Sbjct 6392 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATTGTCGATGGCGTCCCGCCCGGCATGGCT 6333
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
||| ||||| |||| |||||||| ||| || |||| ||||| || |||||| || || ||
Sbjct 6332 CTGACCGAGTCCGATATCCAGCCCCAGCTGAATCGCCGCCGCCCCGGCCAGAGCTCAATT 6273
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| ||||| | |||||| || |||||| |||| ||| || || ||| ||| ||
Sbjct 6272 ACGACGCCTAGAAACGAGAAGGACCGCGTCGTCATTCAGAGCGGTACCGAGTTCGGTGTC 6213
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339
|| |||||| | || | ||| | | || || |||||||| ||| |||||
Sbjct 6212 ACTCTCGGCACCCCGATTGGCATGCTCGTCCAGAATGAGGACCAGCGCCCCAAGGACTAC 6153
Query 18340 TCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| || ||| || | | || || || || |||||||| | |||||| | |
Sbjct 6152 GGCAACTCCACGATGGACATGTTCCCCCGCCCGTCCCACGCCGATTGGACCTACCTCGAG 6093
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
||||||||| ||||||| || || || || ||||| || || ||||||||||| |
Sbjct 6092 AAGTACGGCGTCAAGGCCTCCTCCGGTGGTGGCCGTTCCTCGGCCCGCGAGACAATTGCC 6033
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
|||||||| |||||||| ||||||||||
Sbjct 6032 CGCGTCGCTGCCGGCGCCCTCGCCGAGAA 6004
Score = 118 bits (130), Expect = 1e-20
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
|| ||||||||||||||||| || || ||||| |||||| ||| | | ||||||
Sbjct 5771 GACGACAGCATCGGCGGCACCGTCACCTGCGTCATCCGCAACCCGCCCTCGGCGCTCGGC 5712
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| |||||||| |||||| ||||||||||| ||||| ||
Sbjct 5711 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTCGCACACGCCATGCTCAGCATCCCCGCT 5652
Query 19164 ACCAAGGGATTCGAGATTGG 19183
|| ||||| |||||||| ||
Sbjct 5651 ACAAAGGGCTTCGAGATCGG 5632
>seq1932
Length=74184
Score = 183 bits (202), Expect = 4e-40
Identities = 334/489 (68%), Gaps = 15/489 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| ||||| || |||||||| | || ||||| ||
Sbjct 58617 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGA 58558
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||||||| || | |||| ||| | ||| || | ||| ||| | ||
Sbjct 58557 GGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGACC 58498
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||||| || ||| ||||||||| | ||||| ||||| ||||||||||| |||||
Sbjct 58497 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 58438
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||||| |||||||||| ||||| ||||| || || || || | || ||
Sbjct 58437 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 58378
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||||||| ||||| | || |||||| |||| | |||||| || ||||||
Sbjct 58377 GGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 58318
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| | |||||| | | ||||||| |||| || ||||| |||||
Sbjct 58317 CTCAATGACGCGCTCAA---CATCGTC-----------ACCC-CAGATGCCGACTGCGAC 58273
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| ||| || | |||| | | |||| | ||| |||||| ||
Sbjct 58272 ACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGA 58213
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
| || ||| ||| || ||||| || || |||||||||| | |||||
Sbjct 58212 TCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 58153
Query 1630545 GGCGTCGAG 1630553
| ||||||
Sbjct 58152 AGAGTCGAG 58144
>seq1701
Length=48026
Score = 141 bits (156), Expect = 1e-27
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067
|||||||||| ||||| ||||||| |||| |||| | || |||||| | |
Sbjct 16171 TCGACGTCGTTCGCAACCGCATCAAGGGTTTCGCCCAGAAGAAGGTCACCCTGCCCCAGG 16230
Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127
| ||||||||| | |||||||||||||||||||| || | || || | ||||||||||
Sbjct 16231 GCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAGG 16290
Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187
||||||| || ||||||| || |||||||||||||||| ||| | || ||||||
Sbjct 16291 CCCTGCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 16350
Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238
||| | | |||||||| | || || || |||||||| || ||||
Sbjct 16351 AGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCGCT 16401
>seq1776
Length=66142
Score = 140 bits (154), Expect = 4e-27
Identities = 94/105 (90%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| ||||||||||| || ||||| |||| |||||| | || ||||||||||
Sbjct 53074 CCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACCGTTGCCAACATGA 53133
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
|||||||||||||||||||||||||||||||||| || |||||||
Sbjct 53134 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACGTTCAACATCA 53178
>seq1058
Length=49244
Score = 120 bits (132), Expect = 4e-21
Identities = 175/244 (72%), Gaps = 4/244 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | |||||| ||| || |||||||||||||| | || |||||
Sbjct 16072 GCCTTCTGGTAGTCGGCAACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 16131
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | || ||||||| | ||||||| ||| ||| || |||| ||
Sbjct 16132 TTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAAC- 16190
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| || || |||||||| || |||||||||||||| ||| | | || |||||||||||
Sbjct 16191 CAAG-AGACGGTCGGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGA 16249
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
||| || ||||| | |||| | | ||||| | ||| |||| |||||| || ||||
Sbjct 16250 GGAGAGCGCAAGGCAGAGCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGA 16309
Query 868929 TGAT 868932
| ||
Sbjct 16310 TAAT 16313
Score = 107 bits (118), Expect = 2e-17
Identities = 127/170 (75%), Gaps = 3/170 (2%)
Strand=Plus/Plus
Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260
|||||| |||| || ||||||||||| || |||||||||||||| ||||||| | |
Sbjct 16408 TCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCG 16467
Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320
|| || ||| ||||| |||||||| ||||| ||| | | ||||||| ||| |||
Sbjct 16468 AAGGCACCGCTGAAGAAGATACCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAG 16527
Query 869321 GTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTT 869370
| || || || | | |||||||||||| |||||||| ||||| ||
Sbjct 16528 --GAAGA-GCTATCGTCGCTGATCCACTTCAAGGCCCAGTCAGCCTTCTT 16574
>seq1527
Length=7613
Score = 96.9 bits (106), Expect = 4e-14
Identities = 238/352 (68%), Gaps = 13/352 (4%)
Strand=Plus/Plus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||| ||||||| | |||||| | || || |||| | | | |||||||||||||| ||||
Sbjct 5300 GGCCGCGGCGCCAATGGCGTCAA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTTTTGA 5358
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || || | ||||||||| | |||| ||| || ||||
Sbjct 5359 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCTGTGGTGC 5418
Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGAG-GAC 1726868
| ||||| | ||| ||| | | | |||||| | || |||| ||| |
Sbjct 5419 GGGCGCCGATGGCACCCACAGAAATGAAGTCTGCGAGGAACTGGGGGG----AGATTGTG 5474
Query 1726869 T-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGG 1726927
| ||| | |||| ||| | |||| || | || || ||| |||| || || ||
Sbjct 5475 TCGAGCATCTCGCTGGCGATGGGC--ATGCCAGCCGTCGT-GAGGTCGCTGAAGAGCTGG 5531
Query 1726928 CGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCC 1726987
|| || |||||| | | | | | | ||||| ||| |||||| ||
Sbjct 5532 CGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGATG 5591
Query 1726988 AGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGA 1727039
||||||||||| |||||||| ||||||||||| |||| |||||||||||||
Sbjct 5592 AGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGA 5643
>seq682
Length=146227
Score = 91.5 bits (100), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 6/210 (3%)
Strand=Plus/Plus
Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439
||||| |||||| ||||| ||||||| || | || || ||| | ||||| ||
Sbjct 29452 CCGGTGCTGCCAAACCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCGACG 29511
Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499
|||||| | || || |||| | |||||||||||| ||||||| | |
Sbjct 29512 ATCTCGGGGGTGAAGATGCGCTCAATGATGAGCTGGGCGATGCGG---TCGCCCTCGGCG 29568
Query 1572500 ACGTG---GTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCG 1572556
|| | ||| | ||||| |||||||||||| | ||| |||| |||||| ||||||
Sbjct 29569 ACCTCAAAGTCCGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTCG 29628
Query 1572557 GCATCGATGACGCCTGCGCCGACGTCGATG 1572586
|| ||||||||||| ||||| |||||||
Sbjct 29629 GCGTCGATGACGCCGGCGCCCGTGTCGATG 29658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106911388439992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |