Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2627 188 9e-42 seq1932 183 4e-40 seq1701 141 1e-27 seq1776 140 4e-27 seq1058 120 4e-21 seq1527 96.9 4e-14 seq682 91.5 2e-12 >seq2627 Length=11159 Score = 188 bits (208), Expect = 9e-42 Identities = 275/389 (71%), Gaps = 6/389 (2%) Strand=Plus/Minus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||||||| ||| |||| ||||| ||||| ||||| | Sbjct 6392 GGCGAGTCCCACGGCAAGTCCGTCGGCGTCATTGTCGATGGCGTCCCGCCCGGCATGGCT 6333 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 ||| ||||| |||| |||||||| ||| || |||| ||||| || |||||| || || || Sbjct 6332 CTGACCGAGTCCGATATCCAGCCCCAGCTGAATCGCCGCCGCCCCGGCCAGAGCTCAATT 6273 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | ||||| | |||||| || |||||| |||| ||| || || ||| ||| || Sbjct 6272 ACGACGCCTAGAAACGAGAAGGACCGCGTCGTCATTCAGAGCGGTACCGAGTTCGGTGTC 6213 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339 || |||||| | || | ||| | | || || |||||||| ||| ||||| Sbjct 6212 ACTCTCGGCACCCCGATTGGCATGCTCGTCCAGAATGAGGACCAGCGCCCCAAGGACTAC 6153 Query 18340 TCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | || ||| || | | || || || || |||||||| | |||||| | | Sbjct 6152 GGCAACTCCACGATGGACATGTTCCCCCGCCCGTCCCACGCCGATTGGACCTACCTCGAG 6093 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 ||||||||| ||||||| || || || || ||||| || || ||||||||||| | Sbjct 6092 AAGTACGGCGTCAAGGCCTCCTCCGGTGGTGGCCGTTCCTCGGCCCGCGAGACAATTGCC 6033 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 |||||||| |||||||| |||||||||| Sbjct 6032 CGCGTCGCTGCCGGCGCCCTCGCCGAGAA 6004 Score = 118 bits (130), Expect = 1e-20 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 || ||||||||||||||||| || || ||||| |||||| ||| | | |||||| Sbjct 5771 GACGACAGCATCGGCGGCACCGTCACCTGCGTCATCCGCAACCCGCCCTCGGCGCTCGGC 5712 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||||||| |||||| ||||||||||| ||||| || Sbjct 5711 GAGCCCTGCTTCGACAAGCTCGAGGCCCAGCTCGCACACGCCATGCTCAGCATCCCCGCT 5652 Query 19164 ACCAAGGGATTCGAGATTGG 19183 || ||||| |||||||| || Sbjct 5651 ACAAAGGGCTTCGAGATCGG 5632 >seq1932 Length=74184 Score = 183 bits (202), Expect = 4e-40 Identities = 334/489 (68%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| ||||| || |||||||| | || ||||| || Sbjct 58617 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGA 58558 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||||||| || | |||| ||| | ||| || | ||| ||| | || Sbjct 58557 GGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGACC 58498 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || ||| ||||||||| | ||||| ||||| ||||||||||| ||||| Sbjct 58497 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 58438 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||||| |||||||||| ||||| ||||| || || || || | || || Sbjct 58437 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTGGCACTGAGGGGTACC 58378 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||| ||||| | || |||||| |||| | |||||| || |||||| Sbjct 58377 GGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTAGGT 58318 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | | |||||| | | ||||||| |||| || ||||| ||||| Sbjct 58317 CTCAATGACGCGCTCAA---CATCGTC-----------ACCC-CAGATGCCGACTGCGAC 58273 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| ||| || | |||| | | |||| | ||| |||||| || Sbjct 58272 ACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGA 58213 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 | || ||| ||| || ||||| || || |||||||||| | ||||| Sbjct 58212 TCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 58153 Query 1630545 GGCGTCGAG 1630553 | |||||| Sbjct 58152 AGAGTCGAG 58144 >seq1701 Length=48026 Score = 141 bits (156), Expect = 1e-27 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| |||| |||| | || |||||| | | Sbjct 16171 TCGACGTCGTTCGCAACCGCATCAAGGGTTTCGCCCAGAAGAAGGTCACCCTGCCCCAGG 16230 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | |||||||||||||||||||| || | || || | |||||||||| Sbjct 16231 GCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAGG 16290 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 ||||||| || ||||||| || |||||||||||||||| ||| | || |||||| Sbjct 16291 CCCTGCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 16350 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCT 1574238 ||| | | |||||||| | || || || |||||||| || |||| Sbjct 16351 AGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCGCT 16401 >seq1776 Length=66142 Score = 140 bits (154), Expect = 4e-27 Identities = 94/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| ||||||||||| || ||||| |||| |||||| | || |||||||||| Sbjct 53074 CCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACCGTTGCCAACATGA 53133 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 |||||||||||||||||||||||||||||||||| || ||||||| Sbjct 53134 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACGTTCAACATCA 53178 >seq1058 Length=49244 Score = 120 bits (132), Expect = 4e-21 Identities = 175/244 (72%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | |||||| ||| || |||||||||||||| | || ||||| Sbjct 16072 GCCTTCTGGTAGTCGGCAACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATG 16131 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | || ||||||| | ||||||| ||| ||| || |||| || Sbjct 16132 TTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAAC- 16190 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || || |||||||| || |||||||||||||| ||| | | || ||||||||||| Sbjct 16191 CAAG-AGACGGTCGGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGA 16249 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 ||| || ||||| | |||| | | ||||| | ||| |||| |||||| || |||| Sbjct 16250 GGAGAGCGCAAGGCAGAGCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGA 16309 Query 868929 TGAT 868932 | || Sbjct 16310 TAAT 16313 Score = 107 bits (118), Expect = 2e-17 Identities = 127/170 (75%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| || ||||||||||| || |||||||||||||| ||||||| | | Sbjct 16408 TCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCG 16467 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 || || ||| ||||| |||||||| ||||| ||| | | ||||||| ||| ||| Sbjct 16468 AAGGCACCGCTGAAGAAGATACCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAG 16527 Query 869321 GTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 | || || || | | |||||||||||| |||||||| ||||| || Sbjct 16528 --GAAGA-GCTATCGTCGCTGATCCACTTCAAGGCCCAGTCAGCCTTCTT 16574 >seq1527 Length=7613 Score = 96.9 bits (106), Expect = 4e-14 Identities = 238/352 (68%), Gaps = 13/352 (4%) Strand=Plus/Plus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||| ||||||| | |||||| | || || |||| | | | |||||||||||||| |||| Sbjct 5300 GGCCGCGGCGCCAATGGCGTCAA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTTTTGA 5358 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || || | ||||||||| | |||| ||| || |||| Sbjct 5359 AGCCGACGGGGAAGGACAGGCCGGAGGCGAGCTCGCGGTGGAGCTGGGACTCTGTGGTGC 5418 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGAG-GAC 1726868 | ||||| | ||| ||| | | | |||||| | || |||| ||| | Sbjct 5419 GGGCGCCGATGGCACCCACAGAAATGAAGTCTGCGAGGAACTGGGGGG----AGATTGTG 5474 Query 1726869 T-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGG 1726927 | ||| | |||| ||| | |||| || | || || ||| |||| || || || Sbjct 5475 TCGAGCATCTCGCTGGCGATGGGC--ATGCCAGCCGTCGT-GAGGTCGCTGAAGAGCTGG 5531 Query 1726928 CGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCC 1726987 || || |||||| | | | | | | ||||| ||| |||||| || Sbjct 5532 CGGGAGATGCGCAGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCCGGGTCGTTGATG 5591 Query 1726988 AGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGA 1727039 ||||||||||| |||||||| ||||||||||| |||| ||||||||||||| Sbjct 5592 AGGCCCTTCCAGCCGACGGTGGTGCGCGGCTTCTCGAGGTAGGCGCGCATGA 5643 >seq682 Length=146227 Score = 91.5 bits (100), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 1572380 CCGGTCGAGCCAAAGCCGCCGCTGCCGCGCTCGGTGTCGTCCAGCGAGTCGACCCACTCG 1572439 ||||| |||||| ||||| ||||||| || | || || ||| | ||||| || Sbjct 29452 CCGGTGCTGCCAAACCCGCCAGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCGACG 29511 Query 1572440 GGCTCGGGTTGGGCAATCTTTTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACA 1572499 |||||| | || || |||| | |||||||||||| ||||||| | | Sbjct 29512 ATCTCGGGGGTGAAGATGCGCTCAATGATGAGCTGGGCGATGCGG---TCGCCCTCGGCG 29568 Query 1572500 ACGTG---GTCGGCGTCGGTGTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCG 1572556 || | ||| | ||||| |||||||||||| | ||| |||| |||||| |||||| Sbjct 29569 ACCTCAAAGTCCGTGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTGGCCGCGGTAGTCG 29628 Query 1572557 GCATCGATGACGCCTGCGCCGACGTCGATG 1572586 || ||||||||||| ||||| ||||||| Sbjct 29629 GCGTCGATGACGCCGGCGCCCGTGTCGATG 29658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106911388439992