Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1932 109 5e-19 seq791 104 2e-17 seq1741 82.4 7e-11 >seq1932 Length=74184 Score = 109 bits (120), Expect = 5e-19 Identities = 722/1148 (63%), Gaps = 50/1148 (4%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || || ||||| | || || || ||| |||||| ||| | ||||| || Sbjct 59663 ACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAG 59604 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||||| |||| ||||| | |||| || || |||||| || || | ||| Sbjct 59603 CACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACAAGCAGA 59544 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCG 138687 || || | |||||| |||||| | ||||| || || ||||||||| | || Sbjct 59543 CTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCA 59484 Query 138688 CTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAA--ACTTGCGGGACTGCCTT 138745 || || |||||||| |||||||| | || ||| | | |||| ||| | Sbjct 59483 GAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGA--GCCCT 59426 Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCG--CCTCG--AGCGCA 138801 |||||| ||| ||| ||| |||| |||| || | | | || ||| Sbjct 59425 CGTACGTGGAGTAGGTACCCTCCTCCCTGGCCA----GTTGAACGGACATGGTCAGAGCA 59370 Query 138802 CCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTAC 138861 | | ||| || || ||| ||||| || ||||| || ||||| | |||| | Sbjct 59369 GCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCGAGCCTCAGGAGACTCGAAA 59310 Query 138862 GGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGA 138921 |||||||| || ||| || || || || || || || || | |||| || || Sbjct 59309 GGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAGGCCGATGGGACGG 59250 Query 138922 TGGCGCAGATTTGACGCTTTTGCG-GCTTCGATA---GGATAATAGTTTACATCGATGAT 138977 || |||| || ||| ||||| || || | || || | ||| ||||| ||||| Sbjct 59249 TGACGCATGTT----GCTGTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAATGAT 59194 Query 138978 TTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATG 139036 ||||| | || || || || |||| ||| | | | || | | | |||||||| Sbjct 59193 CTTGTTCAGGTTGCGGACAACGACCTGAGTGACCT-CGTGAAGCTTCTGGAAATCGTAGA 59135 Query 139037 TGCCCCCGTTGTCGTCGACGACG-TCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 ||| |||||| ||| |||| | | | || | || | ||||| | |||| Sbjct 59134 CACCCTCGTTGTAGTCAACGAAGGTAGGCAG-------GGCAAGA---GAGGCCAAGTTG 59085 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || || || || || ||| ||| ||| || | || || | || | ||| | Sbjct 59084 CATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGATTGGAGCTG 59025 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||| || || | || | || ||||| || ||||| || || ||||||||||| Sbjct 59024 CGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATG 58965 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAG--TC----CCTA 139269 | || |||| || || || | ||| | ||| | | ||| || ||| Sbjct 58964 AAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCA-AAGCTTCTGGGCCTT 58906 Query 139270 GCTTGTATTT-GACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA 139328 | | || || ||| | | | |||||||||||||| ||||| | | ||||| Sbjct 58905 GATGGTCTTGCGACCCTTGC------CTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAA 58852 Query 139329 TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATAC 139388 || |||||| ||||| || || | |||| || ||||||||||| | |||| | Sbjct 58851 CTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCATTC 58792 Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 | ||||| || ||| | | ||||||||||||| || ||||| | |||| | | || Sbjct 58791 GGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTC 58732 Query 139449 GCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTC 139508 || || || ||| || ||| || || | ||| ||||| || || Sbjct 58731 ACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCAAAGACATC 58672 Query 139509 AGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATC 139565 |||||||| || || || |||||||| | || || || |||||||| || || Sbjct 58671 GGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTC 58612 Query 139566 GACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCC 139625 ||||| || ||| || ||||| || || | ||| || | |||| | | || || Sbjct 58611 GACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCC 58552 Query 139626 GTTGGTGC 139633 |||||||| Sbjct 58551 GTTGGTGC 58544 >seq791 Length=44334 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || ||||| || || | || Sbjct 42666 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 42607 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 42606 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAG 42547 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 42546 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 42487 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| |||| |||| |||| || || Sbjct 42486 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 42440 >seq1741 Length=26822 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| || ||||| || || || || || || || || |||||||||||||| || || Sbjct 16827 AAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAG 16886 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || |||||| | | | | || || || |||||||| ||||| || || || ||| Sbjct 16887 CAACTTGAGGATGGCCGCACCCTATCCGACTACAACATTCAGAAGGAGTCCACGCTCCAC 16946 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | || | ||||| || Sbjct 16947 TTGGTTCTCCGTCTTCGCGGTGG 16969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449881988553280