Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1701 167 4e-35 seq1932 145 1e-28 seq1776 140 5e-27 seq1058 104 4e-16 >seq1701 Length=48026 Score = 167 bits (184), Expect = 4e-35 Identities = 215/295 (73%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCG 2019204 |||||||| || | ||||||| | ||| | | ||||| || |||||| | | Sbjct 16173 GACGTCGTTCGCAACCGCATCAAGGGTTTCGC--CCAGAAGAAGGTCACCCTGCCCCAGG 16230 Query 2019205 GCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGG 2019264 ||||||||||| | |||||||||| ||||||||| || | || || | |||||||||| Sbjct 16231 GCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAGG 16290 Query 2019265 CCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACA 2019324 |||| || ||| ||||||| ||| ||||||||||||| || || | ||||||||| Sbjct 16291 CCCTGCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 16350 Query 2019325 CGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCC 2019384 ||| | | ||||||| | || ||| || ||||||||| | |||| || || | Sbjct 16351 AGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCGCTACGCCCGAC 16410 Query 2019385 TCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 ||||||||| ||| ||| | |||||| | | || ||||| ||||||||||| Sbjct 16411 TCACCGACGAGCAGGTCGTCAAGCGTCTCCTGCAAATCATCGAAGCCGAAAAGGT 16465 >seq1932 Length=74184 Score = 145 bits (160), Expect = 1e-28 Identities = 337/507 (66%), Gaps = 27/507 (5%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| ||||| || |||||||| | | ||||| || Sbjct 58617 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGA 58558 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||||||| || | |||| ||| | ||| || | ||| ||| | || Sbjct 58557 GGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGACC 58498 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| || ||| ||||||||| | ||||| | || || || |||||||| ||||| Sbjct 58497 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 58438 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGT 2073776 || ||||| |||||||||| | || ||||| || || || ||| | | || Sbjct 58437 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGA---CAGCTGGCACTGAGGGGT 58381 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 ||||| |||||||| ||||| | || ||| | ||| ||||||| | ||| Sbjct 58380 ACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTA 58321 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 ||| | | |||||| | || ||| || || || ||||| || Sbjct 58320 GGTCTCAATGACGCGC------------TCAACATCGTCA---CCCCAGATGCCGACTGC 58276 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAG 2073953 ||| ||||||||||||| ||| |||| |||| | | | ||||| | ||| ||| Sbjct 58275 GACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCG---AGCTTCAGCAG 58219 Query 2073954 GTAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCG 2074013 ||| || | |||||| | || ||||| |||| | |||||| |||| | Sbjct 58218 GTATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGAC 58159 Query 2074014 GATGGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||||| | |||||| |||||||||| Sbjct 58158 AATGGCAGAGTCGAGCTCCTCCTTGTG 58132 >seq1776 Length=66142 Score = 140 bits (154), Expect = 5e-27 Identities = 94/105 (90%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| |||||||||||||||||||| | || ||||||||||| |||||| | | Sbjct 53074 CCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACCGTTGCCAACATGA 53133 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 |||||||||||||||||||||| ||||||||||| || ||||||| Sbjct 53134 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACGTTCAACATCA 53178 >seq1058 Length=49244 Score = 104 bits (114), Expect = 4e-16 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||| | |||||| ||| || |||||||||||||| | || ||||| |||||| Sbjct 16081 TAGTCGGCAACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 16140 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025 | || ||||||| | | |||| ||| ||| || |||| || |||| || | Sbjct 16141 AAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAAC-CAAG-AGAC 16198 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 ||||||| ||||| || |||||||| ||| | | || ||||||||||| ||| || Sbjct 16199 GGTCGGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGC 16258 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||||| | |||| | | ||||| | ||| |||| |||||| || | ||| || Sbjct 16259 AAGGCAGAGCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAAT 16313 Score = 93.3 bits (102), Expect = 7e-13 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || ||||||||||| || |||||||||||||| ||||||| ||| || ||| Sbjct 16423 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 16482 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAG-GCCCTC 794495 ||||| |||||||| ||||| ||| | || ||||||| ||| || | || || || Sbjct 16483 AAGATACCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAGG----AAGAGCTATC 16538 Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTT 794531 | | |||||||||||| ||||| || ||||| || Sbjct 16539 GTCGCTGATCCACTTCAAGGCCCAGTCAGCCTTCTT 16574 Score = 93.3 bits (102), Expect = 7e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 794582 CCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGA 794641 |||| ||||||| ||| |||||||||||||| ||||||||||| ||||| ||||| || | Sbjct 16678 CCGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGAATGTTCTCCA 16737 Query 794642 TGGCGATCTGGAAGCCATAAAAGCAG 794667 | ||||||||| || || |||||| Sbjct 16738 TCATGATCTGGAAACCGTAGAAGCAG 16763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915951104218664