Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1701 167 4e-35
seq1932 145 1e-28
seq1776 140 5e-27
seq1058 104 4e-16
>seq1701
Length=48026
Score = 167 bits (184), Expect = 4e-35
Identities = 215/295 (73%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAA--TCGACCTGCCGCCCG 2019204
|||||||| || | ||||||| | ||| | | ||||| || |||||| | |
Sbjct 16173 GACGTCGTTCGCAACCGCATCAAGGGTTTCGC--CCAGAAGAAGGTCACCCTGCCCCAGG 16230
Query 2019205 GCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGG 2019264
||||||||||| | |||||||||| ||||||||| || | || || | ||||||||||
Sbjct 16231 GCCGCCACAAGCTCGTCATCCTCGACGAGGCCGACAGCATGACATCAGGCGCCCAGCAGG 16290
Query 2019265 CCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACA 2019324
|||| || ||| ||||||| ||| ||||||||||||| || || | |||||||||
Sbjct 16291 CCCTGCGCCGGACAATGGAAATCTACTCCAACACGACGCGCTTCGCCTTCGCCTGCAACC 16350
Query 2019325 CGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCC 2019384
||| | | ||||||| | || ||| || ||||||||| | |||| || || |
Sbjct 16351 AGTCCAACAAGATCATCGAGCCGCTGCAGTCACGATGCGCCATCCTCCGCTACGCCCGAC 16410
Query 2019385 TCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439
||||||||| ||| ||| | |||||| | | || ||||| |||||||||||
Sbjct 16411 TCACCGACGAGCAGGTCGTCAAGCGTCTCCTGCAAATCATCGAAGCCGAAAAGGT 16465
>seq1932
Length=74184
Score = 145 bits (160), Expect = 1e-28
Identities = 337/507 (66%), Gaps = 27/507 (5%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| ||||| || |||| ||| ||||| || |||||||| | | ||||| ||
Sbjct 58617 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGA 58558
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
|||||||||||| || | |||| ||| | ||| || | ||| ||| | ||
Sbjct 58557 GGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGACC 58498
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||| || ||| ||||||||| | ||||| | || || || |||||||| |||||
Sbjct 58497 AATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTC 58438
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGC---GCGCCGT 2073776
|| ||||| |||||||||| | || ||||| || || || ||| | | ||
Sbjct 58437 AATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGA---CAGCTGGCACTGAGGGGT 58381
Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836
||||| |||||||| ||||| | || ||| | ||| ||||||| | |||
Sbjct 58380 ACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTTGTA 58321
Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896
||| | | |||||| | || ||| || || || ||||| ||
Sbjct 58320 GGTCTCAATGACGCGC------------TCAACATCGTCA---CCCCAGATGCCGACTGC 58276
Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAG 2073953
||| ||||||||||||| ||| |||| |||| | | | ||||| | ||| |||
Sbjct 58275 GACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCG---AGCTTCAGCAG 58219
Query 2073954 GTAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCG 2074013
||| || | |||||| | || ||||| |||| | |||||| |||| |
Sbjct 58218 GTATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGAC 58159
Query 2074014 GATGGCGGCGTCGAGGGCCTCCTTGTG 2074040
||||| | |||||| ||||||||||
Sbjct 58158 AATGGCAGAGTCGAGCTCCTCCTTGTG 58132
>seq1776
Length=66142
Score = 140 bits (154), Expect = 5e-27
Identities = 94/105 (90%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||| |||||||||||||||||||| | || ||||||||||| |||||| | |
Sbjct 53074 CCAACTACCTGGACATCAAGCCCCTCCTCGACGTTGGCTGCAAGACCGTTGCCAACATGA 53133
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
|||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 53134 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACGTTCAACATCA 53178
>seq1058
Length=49244
Score = 104 bits (114), Expect = 4e-16
Identities = 166/235 (71%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
|| ||| | |||||| ||| || |||||||||||||| | || ||||| ||||||
Sbjct 16081 TAGTCGGCAACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 16140
Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GAGCGACGCAAGCAGGC 794025
| || ||||||| | | |||| ||| ||| || |||| || |||| || |
Sbjct 16141 AAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCAAC-CAAG-AGAC 16198
Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085
||||||| ||||| || |||||||| ||| | | || ||||||||||| ||| ||
Sbjct 16199 GGTCGGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGC 16258
Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140
||||| | |||| | | ||||| | ||| |||| |||||| || | ||| ||
Sbjct 16259 AAGGCAGAGCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAAT 16313
Score = 93.3 bits (102), Expect = 7e-13
Identities = 115/156 (74%), Gaps = 5/156 (3%)
Strand=Plus/Plus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
|| ||||||||||| || |||||||||||||| ||||||| ||| || |||
Sbjct 16423 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 16482
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAG-GCCCTC 794495
||||| |||||||| ||||| ||| | || ||||||| ||| || | || || ||
Sbjct 16483 AAGATACCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAGG----AAGAGCTATC 16538
Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTT 794531
| | |||||||||||| ||||| || ||||| ||
Sbjct 16539 GTCGCTGATCCACTTCAAGGCCCAGTCAGCCTTCTT 16574
Score = 93.3 bits (102), Expect = 7e-13
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 794582 CCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGA 794641
|||| ||||||| ||| |||||||||||||| ||||||||||| ||||| ||||| || |
Sbjct 16678 CCGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTCTCAGAGTGAATGTTCTCCA 16737
Query 794642 TGGCGATCTGGAAGCCATAAAAGCAG 794667
| ||||||||| || || ||||||
Sbjct 16738 TCATGATCTGGAAACCGTAGAAGCAG 16763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915951104218664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |