Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 316 2e-81
seq791 138 1e-27
seq1741 114 1e-20
seq1821 109 5e-19
seq1058 109 5e-19
>seq1932
Length=74184
Score = 316 bits (350), Expect = 2e-81
Identities = 1144/1764 (65%), Gaps = 73/1764 (4%)
Strand=Plus/Minus
Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109
|||||| |||||| ||||| || ||||| || || ||||| | ||| | ||||
Sbjct 59876 GACTGGGACTGGTCGATGAAGGCACCACGATCGGCAGCCATCTGGACAACGGTGCGCTGG 59817
Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169
|| |||||| | ||||||||||| ||||| | |||||||| | ||||
Sbjct 59816 GAG---ATTTCCCAGACGGTCTTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATG 59760
Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229
||| || || || | |||| || | || ||| | || | ||| |
Sbjct 59759 TTCTGAACGGAACCATTCTCGGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCC 59700
Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289
| |||| || || | | ||| | | || || ||||| ||||||||||| || ||
Sbjct 59699 ATGTCGACGAGATCCTTAAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACA 59640
Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349
|| ||| | || | |||| || | || || || |||||||||||||||| |||||
Sbjct 59639 CGGCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGG 59580
Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409
| || | || || |||||| || || ||||| |||||| | |||| | | ||
Sbjct 59579 GAAGTGGAGGCAGTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTG 59520
Query 148410 ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCG 148469
|| | |||||||| ||||||||||||| || || | || ||||||||||||
Sbjct 59519 ATCTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCG 59460
Query 148470 TACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCC 148529
||||| || || || || ||| ||||||||||| | ||| | || | | ||
Sbjct 59459 TACTGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCC 59400
Query 148530 GCCGCCAGTT---CGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGC 148586
||||||| || | | | | || || ||| ||| || |||||| ||| | |
Sbjct 59399 CTGGCCAGTTGAACGGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAAATCTTC 59343
Query 148587 CTGTTGAGCAGCGC-CGCC----GACTCGCTTTCGTACGGCATACGCAGCCGCACAAACG 148641
||||||| | ||| ||| || | ||| | ||||| || || | || |
Sbjct 59342 TTGTTGAG-ATCGCGAGCCTCAGGAGAC----TCGAAAGGCATGCGTAGGGCAAGGAAGG 59288
Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701
| || ||||| ||||| || || | ||| ||||| ||||| |||||| | ||| |
Sbjct 59287 CATCAGCAAGACCCTGGACACCAAGGCCGATGGGACGGTGACGCATGTTGCTGTTGCGAG 59228
Query 148702 CGCTCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACC 148760
| ||| || | || ||||||||| || |||||||||| || ||||| || || |||
Sbjct 59227 C-CTCAGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACC 59169
Query 148761 TTTGTAATTCTGCGCAGCAATTCAAAATCGTA---------CTTGTCATCTACGATGCAT 148811
| || | | | ||| | |||||||| |||| || |||| | |
Sbjct 59168 TGAGTGACCTCGTGAAGCTTCTGGAAATCGTAGACACCCTCGTTGTAGTCAACGAAG-GT 59110
Query 148812 CGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCT 148871
|| || ||| | |||||| | ||||| || || |||||| ||||||| ||||||
Sbjct 59109 AGG--CAGGGCAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCA 59052
Query 148872 ACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTG 148931
| |||||| | ||| |||||| || ||| || | |||||| || |||||||||
Sbjct 59051 ATGATCTCAGTGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTG 58992
Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991
| ||| ||||||||||| |||||| | || ||| || || ||| | || |
Sbjct 58991 CGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGG 58932
Query 148992 AT---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT--CCT--- 149043
|| | ||| | || | ||| || |||| || || | |||||||| |||
Sbjct 58931 ATGGCGTACCAA---AGCTTCTGGGC-----CTTGATGGTC-TTGCGACCCTTGCCTTCG 58881
Query 149044 -GCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGG 149100
||||||| | ||| | || ||||||| ||||||||||||| || | || ||||
Sbjct 58880 CGCTCGTACTTCTCGTACAAGGC--CTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGG 58823
Query 149101 GGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACA 149160
|||||| || || |||||||| | ||| || ||| | | || | |||||| ||||
Sbjct 58822 GGCACTCGTTGGGACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACA 58763
Query 149161 GATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGT 149220
||||||| | |||||| ||| | ||||| || || | || || ||| ||
Sbjct 58762 GATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGT 58703
Query 149221 TGCGGCGCAGGTTGA-GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCG 149279
| ||||| || | | || | || | || |||||||| ||||||| ||| | |||
Sbjct 58702 TCTTGCGCAAGTCCATGAACTC-AAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCG 58644
Query 149280 AGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACT 149336
| || || ||| ||||| ||||||||||||| ||| | ||||||| || ||
Sbjct 58643 AAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACA 58584
Query 149337 CGAACCATAGGTTCAATGCCAC---TGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCG 149393
|||| ||| || |||| ||| | | |||||||| || | ||| |||
Sbjct 58583 CGAAGCATGGG---AATGACACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 58527
Query 149394 CGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGC 149452
|| || | ||| |||||| || ||||| || ||| | ||| ||||| ||
Sbjct 58526 GTGGCACGGATACGGTGGGCGTTGAGACCAATGCCACCAGCCAT-CTTGGAGATCATGGC 58468
Query 149453 GCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAA 149512
|||| ||| || |||||| ||||| ||| ||| ||||||| | || ||
Sbjct 58467 GCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAA 58408
Query 149513 GCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT 149572
||| || ||| || | | || ||||| ||| | |||||| |||||| ||
Sbjct 58407 GCATGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGT 58348
Query 149573 -AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCAT 149631
|| | || |||| ||| | | ||| | ||| | ||||| || | || || ||
Sbjct 58347 GAAGAACTTGCTGG-ACATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCC 58289
Query 149632 GGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAA 149691
|||||| | ||||| ||||| | ||| |||||||||| ||| || | ||| | |
Sbjct 58288 AGATGCCGACTGCGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGA 58229
Query 149692 TTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGC 149751
|| |||| ||| | || || || ||| | || ||||| | ||||| |||||||
Sbjct 58228 GCTTCAGCAGGTATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGC 58169
Query 149752 GGCCGTGGTCAATGGCGGCGTCGA 149775
|| ||| | ||||||| | |||||
Sbjct 58168 GGTCGTAGACAATGGCAGAGTCGA 58145
>seq791
Length=44334
Score = 138 bits (152), Expect = 1e-27
Identities = 150/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| | ||| ||||||||||||||| ||
Sbjct 42469 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 42528
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || |||||||||||||| ||||| || |||||||| |||||| |||
Sbjct 42529 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTT 42588
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| |||| ||||| || ||||| ||||| ||
Sbjct 42589 GACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGT 42648
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 42649 CTTGACGAAGATCTGCATG 42667
>seq1741
Length=26822
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | |||||| || ||||| || ||||| |||| || ||| ||| | || || ||||
Sbjct 17174 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA-TCTTCCAGCT 17116
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || ||| | || || ||||||||||||||||| || || ||||| || |||||
Sbjct 17115 GCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCT 17056
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | |||| |||||| | | ||| || || | || | || ||||| |
Sbjct 17055 TGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAG 16996
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
| ||||| || ||||| ||||||||
Sbjct 16995 TAAGAGTCTTCACGAAGATCTGCAT 16971
>seq1821
Length=135001
Score = 109 bits (120), Expect = 5e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
|||||| ||||||||||| ||| | || | |||||||||||||| |||||||| |||||
Sbjct 45938 GTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 45879
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | |||||||| || ||| || || | ||| |
Sbjct 45878 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAAT 45819
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652
||| || || ||||| || || ||||||
Sbjct 45818 GGTCTTACCCGTCAGGGTCTTCACGAAA 45791
>seq1058
Length=49244
Score = 109 bits (120), Expect = 5e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699
||||| |||||||| ||||| || ||||| || || || || ||||||||| || |||
Sbjct 16363 AGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTC 16422
Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759
|| |||||||||| || | |||||| |||| |||| ||| ||| || |||
Sbjct 16423 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 16482
Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819
|| | ||||| || ||| ||||| |||| |||| ||| || | | | | | |
Sbjct 16483 AAGATACCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAGGAAGAGCTATCGTCG 16542
Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCG 120854
||||||||||| |||||| || ||||| |||||
Sbjct 16543 CTGATCCACTTCAAGGCCCAGTCAGCCTTCTTGCG 16577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483404025298240
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