Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1932 316 2e-81 seq791 138 1e-27 seq1741 114 1e-20 seq1821 109 5e-19 seq1058 109 5e-19 >seq1932 Length=74184 Score = 316 bits (350), Expect = 2e-81 Identities = 1144/1764 (65%), Gaps = 73/1764 (4%) Strand=Plus/Minus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109 |||||| |||||| ||||| || ||||| || || ||||| | ||| | |||| Sbjct 59876 GACTGGGACTGGTCGATGAAGGCACCACGATCGGCAGCCATCTGGACAACGGTGCGCTGG 59817 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 || |||||| | ||||||||||| ||||| | |||||||| | |||| Sbjct 59816 GAG---ATTTCCCAGACGGTCTTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATG 59760 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 ||| || || || | |||| || | || ||| | || | ||| | Sbjct 59759 TTCTGAACGGAACCATTCTCGGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCC 59700 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | |||| || || | | ||| | | || || ||||| ||||||||||| || || Sbjct 59699 ATGTCGACGAGATCCTTAAGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACA 59640 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || ||| | || | |||| || | || || || |||||||||||||||| ||||| Sbjct 59639 CGGCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGG 59580 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | || | || || |||||| || || ||||| |||||| | |||| | | || Sbjct 59579 GAAGTGGAGGCAGTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTG 59520 Query 148410 ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCG 148469 || | |||||||| ||||||||||||| || || | || |||||||||||| Sbjct 59519 ATCTGCTCCTTCAGAGAGTCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCG 59460 Query 148470 TACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCC 148529 ||||| || || || || ||| ||||||||||| | ||| | || | | || Sbjct 59459 TACTGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCC 59400 Query 148530 GCCGCCAGTT---CGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGC 148586 ||||||| || | | | | || || ||| ||| || |||||| ||| | | Sbjct 59399 CTGGCCAGTTGAACGGACATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAAATCTTC 59343 Query 148587 CTGTTGAGCAGCGC-CGCC----GACTCGCTTTCGTACGGCATACGCAGCCGCACAAACG 148641 ||||||| | ||| ||| || | ||| | ||||| || || | || | Sbjct 59342 TTGTTGAG-ATCGCGAGCCTCAGGAGAC----TCGAAAGGCATGCGTAGGGCAAGGAAGG 59288 Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701 | || ||||| ||||| || || | ||| ||||| ||||| |||||| | ||| | Sbjct 59287 CATCAGCAAGACCCTGGACACCAAGGCCGATGGGACGGTGACGCATGTTGCTGTTGCGAG 59228 Query 148702 CGCTCTCGAGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACC 148760 | ||| || | || ||||||||| || |||||||||| || ||||| || || ||| Sbjct 59227 C-CTCAGGAACGGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACC 59169 Query 148761 TTTGTAATTCTGCGCAGCAATTCAAAATCGTA---------CTTGTCATCTACGATGCAT 148811 | || | | | ||| | |||||||| |||| || |||| | | Sbjct 59168 TGAGTGACCTCGTGAAGCTTCTGGAAATCGTAGACACCCTCGTTGTAGTCAACGAAG-GT 59110 Query 148812 CGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCT 148871 || || ||| | |||||| | ||||| || || |||||| ||||||| |||||| Sbjct 59109 AGG--CAGGGCAAGAGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCA 59052 Query 148872 ACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTG 148931 | |||||| | ||| |||||| || ||| || | |||||| || ||||||||| Sbjct 59051 ATGATCTCAGTGCAGAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTG 58992 Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991 | ||| ||||||||||| |||||| | || ||| || || ||| | || | Sbjct 58991 CGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGG 58932 Query 148992 AT---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT--CCT--- 149043 || | ||| | || | ||| || |||| || || | |||||||| ||| Sbjct 58931 ATGGCGTACCAA---AGCTTCTGGGC-----CTTGATGGTC-TTGCGACCCTTGCCTTCG 58881 Query 149044 -GCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGG 149100 ||||||| | ||| | || ||||||| ||||||||||||| || | || |||| Sbjct 58880 CGCTCGTACTTCTCGTACAAGGC--CTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGG 58823 Query 149101 GGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACA 149160 |||||| || || |||||||| | ||| || ||| | | || | |||||| |||| Sbjct 58822 GGCACTCGTTGGGACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACA 58763 Query 149161 GATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGT 149220 ||||||| | |||||| ||| | ||||| || || | || || ||| || Sbjct 58762 GATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGT 58703 Query 149221 TGCGGCGCAGGTTGA-GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCG 149279 | ||||| || | | || | || | || |||||||| ||||||| ||| | ||| Sbjct 58702 TCTTGCGCAAGTCCATGAACTC-AAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCG 58644 Query 149280 AGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACT 149336 | || || ||| ||||| ||||||||||||| ||| | ||||||| || || Sbjct 58643 AAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACA 58584 Query 149337 CGAACCATAGGTTCAATGCCAC---TGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCG 149393 |||| ||| || |||| ||| | | |||||||| || | ||| ||| Sbjct 58583 CGAAGCATGGG---AATGACACCGTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 58527 Query 149394 CGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGC 149452 || || | ||| |||||| || ||||| || ||| | ||| ||||| || Sbjct 58526 GTGGCACGGATACGGTGGGCGTTGAGACCAATGCCACCAGCCAT-CTTGGAGATCATGGC 58468 Query 149453 GCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAA 149512 |||| ||| || |||||| ||||| ||| ||| ||||||| | || || Sbjct 58467 GCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAA 58408 Query 149513 GCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT 149572 ||| || ||| || | | || ||||| ||| | |||||| |||||| || Sbjct 58407 GCATGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGT 58348 Query 149573 -AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCAT 149631 || | || |||| ||| | | ||| | ||| | ||||| || | || || || Sbjct 58347 GAAGAACTTGCTGG-ACATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCC 58289 Query 149632 GGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAA 149691 |||||| | ||||| ||||| | ||| |||||||||| ||| || | ||| | | Sbjct 58288 AGATGCCGACTGCGACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGA 58229 Query 149692 TTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGC 149751 || |||| ||| | || || || ||| | || ||||| | ||||| ||||||| Sbjct 58228 GCTTCAGCAGGTATGATCTCTCCAGGGTTTTGAAACCGAAGTATTGGTAGTTGAAGTCGC 58169 Query 149752 GGCCGTGGTCAATGGCGGCGTCGA 149775 || ||| | ||||||| | ||||| Sbjct 58168 GGTCGTAGACAATGGCAGAGTCGA 58145 >seq791 Length=44334 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| ||||||||||||||| || Sbjct 42469 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 42528 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| ||||| || |||||||| |||||| ||| Sbjct 42529 GGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTT 42588 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| |||| ||||| || ||||| ||||| || Sbjct 42589 GACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGT 42648 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 42649 CTTGACGAAGATCTGCATG 42667 >seq1741 Length=26822 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| || ||||| |||| || ||| ||| | || || |||| Sbjct 17174 ATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCA-TCTTCCAGCT 17116 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || ||||||||||||||||| || || ||||| || ||||| Sbjct 17115 GCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCT 17056 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| |||||| | | ||| || || | || | || ||||| | Sbjct 17055 TGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAG 16996 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || ||||| |||||||| Sbjct 16995 TAAGAGTCTTCACGAAGATCTGCAT 16971 >seq1821 Length=135001 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| ||||||||||| ||| | || | |||||||||||||| |||||||| ||||| Sbjct 45938 GTCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 45879 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||||| || ||| || || | ||| | Sbjct 45878 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAAT 45819 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 ||| || || ||||| || || |||||| Sbjct 45818 GGTCTTACCCGTCAGGGTCTTCACGAAA 45791 >seq1058 Length=49244 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| ||||| || ||||| || || || || ||||||||| || ||| Sbjct 16363 AGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTC 16422 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 || |||||||||| || | |||||| |||| |||| ||| ||| || ||| Sbjct 16423 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAG 16482 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 || | ||||| || ||| ||||| |||| |||| ||| || | | | | | | Sbjct 16483 AAGATACCCTCGACAGCGGCGAAGGCAACCAGCCGCTGGGCGAAGGAAGAGCTATCGTCG 16542 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCG 120854 ||||||||||| |||||| || ||||| ||||| Sbjct 16543 CTGATCCACTTCAAGGCCCAGTCAGCCTTCTTGCG 16577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483404025298240