Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 181 1e-40
>seq1932
Length=74184
Score = 181 bits (200), Expect = 1e-40
Identities = 981/1538 (64%), Gaps = 45/1538 (3%)
Strand=Plus/Minus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || |||||||| || || ||||| | | || | ||| |||| | |||
Sbjct 59669 TTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTAGGGC 59610
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || |||| || ||||| || || |||| |||| || ||||||||| || ||
Sbjct 59609 TCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACA 59550
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| || || || | ||||| | ||| | ||||||| || | |||||||||
Sbjct 59549 AGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAG 59490
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132
| |||||| | || ||||||||||||||||| || | || | | || |
Sbjct 59489 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAG 59430
Query 147133 CCAGCGAACGTAGTGTAGCTTCCGT-CGCGCTGCGCCAATTCACAG--CTTGCCTCGAGC 147189
|| || |||| | |||| | || | | | ||| |||| || | | | || || ||
Sbjct 59429 CCCTCGTACGTGGAGTAGGTACCCTCCTCCCTG-GCCAGTTGAACGGACATG-GTC-AGA 59373
Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249
|| | | ||| ||||| ||| || | ||||| || || || || ||||
Sbjct 59372 GCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCGAGCCTCAGGAGACTCG 59313
Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309
||||||| || || | |||||||| || | |||||||| ||| | |||||| ||
Sbjct 59312 AAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAGGCCGATGGGA 59253
Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCG-CTC-GCTATGGGATAGTGGTTGCGATCAATAA 147367
|| || |||||| | | || | ||| | | ||| ||||||||| |||||| |
Sbjct 59252 CGGTGACGCATGTTGCT--GTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAATGA 59195
Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-- 147425
||||||| ||||| || || || || | ||| | | || |||| |||||| ||
Sbjct 59194 TCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGTAGA 59135
Query 147426 -AGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483
| | ||| | | | ||| | | | || || ||| | ||| |||| ||||| ||
Sbjct 59134 CACCCTCGTTGTAGTCAACGAAGG--TAGG--CAGGGCAAGAGAGGCCAAGTTGCATACA 59079
Query 147484 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543
|| ||| || | | ||| ||||| | ||| || | ||| || ||| || |||
Sbjct 59078 GCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGATTGGAGCTGCGGATG 59019
Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603
||| | || | ||| ||||| || || || ||||| ||| | |||||| | ||
Sbjct 59018 GTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGG 58959
Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660
||||||||| || | || | ||| ||| | || | ||| || |
Sbjct 58958 TTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAA---AGCTTCTGGGCCTTGATG 58902
Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720
|| ||| ||| ||| |||||| ||||||||| ||| ||||| ||||||
Sbjct 58901 GTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCG 58842
Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCG 147780
||||| || || |||||||| |||| | |||||||| || | ||| | ||| |
Sbjct 58841 TAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCATTCGGCGTTCTTC 58782
Query 147781 TTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTG 147840
| || | ||| |||||||| || | ||| || ||| | ||| || || || |
Sbjct 58781 TCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGCACGG 58722
Query 147841 CAATCCTC---GGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTG 147896
||||| | || | ||||| ||| | | | || | | ||| ||||||||
Sbjct 58721 ACCTCCTCCTTGCCGTGGTTCTTGCG---CAAGTCCATGAACTC-AAAGACATCGGCGTG 58666
Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953
||| || |||| ||||| ||| | ||||| |||| || || ||||||||||| |
Sbjct 58665 CCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTA 58606
Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013
||| | ||||||| || || || | |||||| | ||| | | |||||||||||
Sbjct 58605 GCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCCGTTGGT 58546
Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GC 148072
| || | | ||| ||| || | ||| |||| | |||||||| || ||
Sbjct 58545 GCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGACCAATGCCACCAGC 58486
Query 148073 CGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGT 148132
| | ||| || || ||||| | || |||||| || || ||| ||| |
Sbjct 58485 CAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGTCTT 58427
Query 148133 TTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG-AGAAA 148191
|| | | | | | || || ||| ||| || | | | | | | ||| || |||
Sbjct 58426 CCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTACCGGCGTTGAAG 58368
Query 148192 AGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAG 148249
|| ||||| ||||| || || || || | || ||| | | || ||||||||
Sbjct 58367 AGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA--CATGAGGTTGTAGGTCTCAATGA 58310
Query 148250 CGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTC 148309
|| || | ||||| || ||||| | ||||| ||||||| ||||||||| ||||
Sbjct 58309 CGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACACGCATGATCATGTGCTGCGGTC 58250
Query 148310 GTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCA 148368
||||||| |||| || || ||| || || ||| | || ||||||||| ||||
Sbjct 58249 TCTCGGCAATCTTG-CCGTCGAGCTTCAGCAGGTATGATCTCTCCAGGGTTTTGAAACCG 58191
Query 148369 AAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406
||||| | ||| | || || | ||||| | |||||
Sbjct 58190 AAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 58153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476594661591360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |