Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1932 181 1e-40 >seq1932 Length=74184 Score = 181 bits (200), Expect = 1e-40 Identities = 981/1538 (64%), Gaps = 45/1538 (3%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| || || ||||| | | || | ||| |||| | ||| Sbjct 59669 TTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTGGAAGTGTAGGGC 59610 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| || || |||| |||| || ||||||||| || || Sbjct 59609 TCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGCATGGGAGCAACA 59550 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || | ||||| | ||| | ||||||| || | ||||||||| Sbjct 59549 AGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAGTCCCAGTCCCAG 59490 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | |||||| | || ||||||||||||||||| || | || | | || | Sbjct 59489 AGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGGGAGATAGGGGAG 59430 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGT-CGCGCTGCGCCAATTCACAG--CTTGCCTCGAGC 147189 || || |||| | |||| | || | | | ||| |||| || | | | || || || Sbjct 59429 CCCTCGTACGTGGAGTAGGTACCCTCCTCCCTG-GCCAGTTGAACGGACATG-GTC-AGA 59373 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || | | ||| ||||| ||| || | ||||| || || || || |||| Sbjct 59372 GCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCGAGCCTCAGGAGACTCG 59313 Query 147250 TAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 ||||||| || || | |||||||| || | |||||||| ||| | |||||| || Sbjct 59312 AAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGACCCTGGACACCAAGGCCGATGGGA 59253 Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCG-CTC-GCTATGGGATAGTGGTTGCGATCAATAA 147367 || || |||||| | | || | ||| | | ||| ||||||||| |||||| | Sbjct 59252 CGGTGACGCATGTTGCT--GTTGCGAGCCTCAGGAACGGGGTAGTGGTTGACATCAATGA 59195 Query 147368 TCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA-- 147425 ||||||| ||||| || || || || | ||| | | || |||| |||||| || Sbjct 59194 TCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGCTTCTGGAAATCGTAGA 59135 Query 147426 -AGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483 | | ||| | | | ||| | | | || || ||| | ||| |||| ||||| || Sbjct 59134 CACCCTCGTTGTAGTCAACGAAGG--TAGG--CAGGGCAAGAGAGGCCAAGTTGCATACA 59079 Query 147484 GCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATG 147543 || ||| || | | ||| ||||| | ||| || | ||| || ||| || ||| Sbjct 59078 GCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGATTGGAGCTGCGGATG 59019 Query 147544 ACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 ||| | || | ||| ||||| || || || ||||| ||| | |||||| | || Sbjct 59018 GTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGG 58959 Query 147604 CCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC 147660 ||||||||| || | || | ||| ||| | || | ||| || | Sbjct 58958 TTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAA---AGCTTCTGGGCCTTGATG 58902 Query 147661 CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCG 147720 || ||| ||| ||| |||||| ||||||||| ||| ||||| |||||| Sbjct 58901 GTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCG 58842 Query 147721 TAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCG 147780 ||||| || || |||||||| |||| | |||||||| || | ||| | ||| | Sbjct 58841 TAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCATTCGGCGTTCTTC 58782 Query 147781 TTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTG 147840 | || | ||| |||||||| || | ||| || ||| | ||| || || || | Sbjct 58781 TCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAAGGTCACGAGCACGG 58722 Query 147841 CAATCCTC---GGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTG 147896 ||||| | || | ||||| ||| | | | || | | ||| |||||||| Sbjct 58721 ACCTCCTCCTTGCCGTGGTTCTTGCG---CAAGTCCATGAACTC-AAAGACATCGGCGTG 58666 Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953 ||| || |||| ||||| ||| | ||||| |||| || || ||||||||||| | Sbjct 58665 CCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGTA 58606 Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 ||| | ||||||| || || || | |||||| | ||| | | ||||||||||| Sbjct 58605 GCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCGTTAGAGGTGCCGTTGGT 58546 Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GC 148072 | || | | ||| ||| || | ||| |||| | |||||||| || || Sbjct 58545 GCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTGAGACCAATGCCACCAGC 58486 Query 148073 CGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGT 148132 | | ||| || || ||||| | || |||||| || || ||| ||| | Sbjct 58485 CAT-CTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCAATGGAGTCTT 58427 Query 148133 TTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG-AGAAA 148191 || | | | | | || || ||| ||| || | | | | | | ||| || ||| Sbjct 58426 CCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAGGGGTACCGGCGTTGAAG 58368 Query 148192 AGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAG 148249 || ||||| ||||| || || || || | || ||| | | || |||||||| Sbjct 58367 AGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA--CATGAGGTTGTAGGTCTCAATGA 58310 Query 148250 CGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTC 148309 || || | ||||| || ||||| | ||||| ||||||| ||||||||| |||| Sbjct 58309 CGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACACGCATGATCATGTGCTGCGGTC 58250 Query 148310 GTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCA 148368 ||||||| |||| || || ||| || || ||| | || ||||||||| |||| Sbjct 58249 TCTCGGCAATCTTG-CCGTCGAGCTTCAGCAGGTATGATCTCTCCAGGGTTTTGAAACCG 58191 Query 148369 AAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 ||||| | ||| | || || | ||||| | ||||| Sbjct 58190 AAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGC 58153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594661591360