Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq609 102 1e-16 >seq609 Length=46141 Score = 102 bits (112), Expect = 1e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 146906 CCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGT 146965 ||||||| | || || | |||||||||| | || ||||||||||| |||| | || Sbjct 45318 CCAGCTGCACCTTGAGCGCGTCCACGTGGTCCACATACACGTGCGCGTCGCCCATGACGT 45259 Query 146966 GCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGT 147025 || | | |||||| || || | | | || | ||||| || || |||| || Sbjct 45258 GCGTGAGGCTTCCCGGCACCAGATCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGT 45199 Query 147026 AGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGC 147085 ||||||| ||||||||||| || || || |||||||| | |||| |||||||||||||| Sbjct 45198 AGCTGGCAATGTTGAAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAGCTGGC 45139 Query 147086 A 147086 | Sbjct 45138 A 45138 Score = 98.7 bits (108), Expect = 1e-15 Identities = 196/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 147106 ACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGG 147164 ||||| ||||| ||| | || ||||||||||| || ||||| ||| ||||| || Sbjct 45061 ACGTAGAACTGCGCAAAC-ATATGGCACGGCGGGAGGGCCATCTTCTTCAGATCCGCTGG 45003 Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAAC 147224 |||||| || || | | || | | | |||||| |||| | || | ||| || Sbjct 45002 GTTCCACGCGCTGAGGAGGATTCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATTAC 44943 Query 147225 CCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGC 147284 | ||| ||||| | ||| || | ||| | ||| | |||| |||||| ||| Sbjct 44942 CTCGGCCAGTTGGTCAATGCCTTGTGCTGTGTAATCCGTCTTGGAGTCGACGTACTCGGC 44883 Query 147285 CCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA 147344 |||||||| | ||| ||||||||||| || || || ||||||||| | | ||| || Sbjct 44882 GCCAAAGTGACGCCATTGGAAGCCGTAGACAGGGCCGAGGTCGCCGACTTCGCGGTGTGA 44823 Query 147345 GAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 || ||| | | | ||| ||||| | || |||| | |||||||||| Sbjct 44822 GAGGCCGACGCTGTCGAGGAACTCACGCGATCCGTTGCCGTCCCAGAT 44775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583467752966400