Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq609 102 1e-16
>seq609
Length=46141
Score = 102 bits (112), Expect = 1e-16
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 146906 CCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGT 146965
||||||| | || || | |||||||||| | || ||||||||||| |||| | ||
Sbjct 45318 CCAGCTGCACCTTGAGCGCGTCCACGTGGTCCACATACACGTGCGCGTCGCCCATGACGT 45259
Query 146966 GCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGT 147025
|| | | |||||| || || | | | || | ||||| || || |||| ||
Sbjct 45258 GCGTGAGGCTTCCCGGCACCAGATCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGT 45199
Query 147026 AGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGC 147085
||||||| ||||||||||| || || || |||||||| | |||| ||||||||||||||
Sbjct 45198 AGCTGGCAATGTTGAAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAGCTGGC 45139
Query 147086 A 147086
|
Sbjct 45138 A 45138
Score = 98.7 bits (108), Expect = 1e-15
Identities = 196/288 (68%), Gaps = 2/288 (1%)
Strand=Plus/Minus
Query 147106 ACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGG 147164
||||| ||||| ||| | || ||||||||||| || ||||| ||| ||||| ||
Sbjct 45061 ACGTAGAACTGCGCAAAC-ATATGGCACGGCGGGAGGGCCATCTTCTTCAGATCCGCTGG 45003
Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAAC 147224
|||||| || || | | || | | | |||||| |||| | || | ||| ||
Sbjct 45002 GTTCCACGCGCTGAGGAGGATTCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGATTAC 44943
Query 147225 CCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGC 147284
| ||| ||||| | ||| || | ||| | ||| | |||| |||||| |||
Sbjct 44942 CTCGGCCAGTTGGTCAATGCCTTGTGCTGTGTAATCCGTCTTGGAGTCGACGTACTCGGC 44883
Query 147285 CCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA 147344
|||||||| | ||| ||||||||||| || || || ||||||||| | | ||| ||
Sbjct 44882 GCCAAAGTGACGCCATTGGAAGCCGTAGACAGGGCCGAGGTCGCCGACTTCGCGGTGTGA 44823
Query 147345 GAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392
|| ||| | | | ||| ||||| | || |||| | ||||||||||
Sbjct 44822 GAGGCCGACGCTGTCGAGGAACTCACGCGATCCGTTGCCGTCCCAGAT 44775
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583467752966400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |