Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 168 1e-35
seq1701 138 2e-26
seq1058 109 8e-18
seq682 89.7 7e-12
>seq1932
Length=74184
Score = 168 bits (186), Expect = 1e-35
Identities = 345/506 (68%), Gaps = 25/506 (5%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| |||||| ||||||| | ||| ||| ||||| |||| |||||
Sbjct 58132 CACAAGGAGGAGCTCGACTCTGCCATTGTCTACGACCGCGACTTCAACTACCAATACTTC 58191
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800
||| | ||| || | || |||||| | ||| || || | | | |||| |
Sbjct 58192 GGTTTCAAAACCCTGGAGAGATCATACCTG-CTGAAGCTCGACGGCAAGATTGCCGAGAG 58250
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
|| ||| | ||| ||||||||||||| | ||| | |||| | ||| |
Sbjct 58251 ACCGCAGCACATGATCATGCGTGTCGCAGTCGGCA--TCTGGGGT----------GACGA 58298
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919
|| | |||| ||| | | |||||| | |||||| ||||| ||| |||||| |
Sbjct 58299 TG---TTGAGCGCGTCATTGAGACCTACAACCTCATGTC-CAGCAAGTTCTTCACCCACG 58354
Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTTTC 259976
| | ||||| ||||| || ||||| || || | ||| || | || || ||||| |
Sbjct 58355 CCTCCCCCACACTCTTCAACGCCGGTACCCCTCAGTGCCAGCTG---TCTTCATGCTTCC 58411
Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036
| | |||||||||| || || || ||||| ||||| ||||| |||||| |||||
Sbjct 58412 TCGTCGACATGAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCA 58471
Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096
| ||||||||| ||| || ||||| ||| | ||| ||| | || ||| | |||
Sbjct 58472 TGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCCCACCGTATCCGTGCCACTGGCT 58531
Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156
|||| | || |||||||||||| || ||||| | | ||||||||||| || || |
Sbjct 58532 CCTATATTGCCGGCACCAACGGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCA 58591
Query 260157 ACGACACGGCGCGCTACGTCGACCAG 260182
|| |||| || |||||||||||||||
Sbjct 58592 ACAACACTGCTCGCTACGTCGACCAG 58617
>seq1701
Length=48026
Score = 138 bits (152), Expect = 2e-26
Identities = 209/296 (71%), Gaps = 6/296 (2%)
Strand=Plus/Minus
Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACC---GGCGATTTGGGCGTCAGTGAGG 332866
||||||||||| ||| || | ||||| ||| | ||| || |||| |||||
Sbjct 16465 ACCTTTTCGGCTTCGATGATTT---GCAGGAGACGCTTGACGACCTGCTCGTCGGTGAGT 16409
Query 332867 CGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG 332926
|| | |||| |||||||| || || |||||| | |||||||| | | ||| |
Sbjct 16408 CGGGCGTAGCGGAGGATGGCGCATCGTGACTGCAGCGGCTCGATGATCTTGTTGGACTGG 16349
Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCC 332986
|||||||| | ||| || |||||||| |||| | ||||||| ||| || ||||||
Sbjct 16348 TTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATTTCCATTGTCCGGCGCAGGGCC 16289
Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046
|| ||||| | | || | || |||||||||||||||||||| || ||||||||| ||
Sbjct 16288 TGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGGATGACGAGCTTGTGGCGGCCC 16229
Query 333047 TGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102
|| ||||| ||| | ||| |||| |||||| ||||| ||||||||
Sbjct 16228 TGGGGCAGGGTGACCTTCTTCTGGGCGAAACCCTTGATGCGGTTGCGAACGACGTC 16173
>seq1058
Length=49244
Score = 109 bits (120), Expect = 8e-18
Identities = 119/154 (77%), Gaps = 3/154 (2%)
Strand=Plus/Minus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182
|| ||||| |||||||| |||||||||||| | | || || || | ||| ||| |||
Sbjct 16574 AAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGC-TCTTC-CTTCGCCCAGC 16517
Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241
|||| || | ||| ||||| |||||||| ||||| ||| || ||| | ||||||
Sbjct 16516 GGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCT 16457
Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
| |||||||||||||| || ||||||||||||||
Sbjct 16456 TCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCT 16423
Score = 91.5 bits (100), Expect = 2e-12
Identities = 174/251 (69%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|| ||||| || |||||| |||| ||| | ||||| | | |||| | ||||| ||
Sbjct 16313 ATTATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTAACCGAGGCTCTGCCTTGCGCT 16254
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
||| ||||||||||| ||| | | ||| |||||||| | | || || |||||||| |
Sbjct 16253 CTCCTCGGCATGAACTCCAAC-TTGATGAAGCAGTACATCG-AGTTCGTTGCCGACCGTC 16196
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| | | || || ||| | || ||| |||| | | ||||||| || | |||
Sbjct 16195 TCTTGGTTGCTCTTGGCAAC-GACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATG 16137
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761
||| ||||| || | |||||||||||||| || ||| |||| || ||| |||
Sbjct 16136 GAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTTGCCGACTACCAG 16077
Query 1456762 AAGGCCGGCGT 1456772
|||||||| ||
Sbjct 16076 AAGGCCGGTGT 16066
>seq682
Length=146227
Score = 89.7 bits (98), Expect = 7e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584
||||||| |||||||||||| | || | |||||| |||||| |||| ||| | ||
Sbjct 29658 CATCGACACGGGCGCCGGCGTCATCGACGCCGACTACCGCGGCCAGGTCAAGGTCCTCCT 29599
Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644
|||||||| ||||| | |||| || |||| | |||| |||||||||||| | |
Sbjct 29598 CTTCAACCACGCCGACACGGACTTTGAGGTCGCCGAGGGCGACCGCATCGCCCAGCTCAT 29539
Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704
| |||| || | |||||| ||| ||||| | || || || | || |||
Sbjct 29538 CATTGAGCGCATCTTCACCCCCGAGATCGTCGAGGTCGCCGAGCTCGAGGAGAGCGTGCG 29479
Query 334705 CGGCACCGGCGGCTTTGG 334722
|||| | ||||| |||||
Sbjct 29478 CGGCGCTGGCGGGTTTGG 29461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177543449697712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |