Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1932 168 1e-35 seq1701 138 2e-26 seq1058 109 8e-18 seq682 89.7 7e-12 >seq1932 Length=74184 Score = 168 bits (186), Expect = 1e-35 Identities = 345/506 (68%), Gaps = 25/506 (5%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| |||||| ||||||| | ||| ||| ||||| |||| ||||| Sbjct 58132 CACAAGGAGGAGCTCGACTCTGCCATTGTCTACGACCGCGACTTCAACTACCAATACTTC 58191 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800 ||| | ||| || | || |||||| | ||| || || | | | |||| | Sbjct 58192 GGTTTCAAAACCCTGGAGAGATCATACCTG-CTGAAGCTCGACGGCAAGATTGCCGAGAG 58250 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 || ||| | ||| ||||||||||||| | ||| | |||| | ||| | Sbjct 58251 ACCGCAGCACATGATCATGCGTGTCGCAGTCGGCA--TCTGGGGT----------GACGA 58298 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919 || | |||| ||| | | |||||| | |||||| ||||| ||| |||||| | Sbjct 58299 TG---TTGAGCGCGTCATTGAGACCTACAACCTCATGTC-CAGCAAGTTCTTCACCCACG 58354 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGC---GCCCGCAGAATTCGTCGTGCTTTC 259976 | | ||||| ||||| || ||||| || || | ||| || | || || ||||| | Sbjct 58355 CCTCCCCCACACTCTTCAACGCCGGTACCCCTCAGTGCCAGCTG---TCTTCATGCTTCC 58411 Query 259977 TGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGC 260036 | | |||||||||| || || || ||||| ||||| ||||| |||||| ||||| Sbjct 58412 TCGTCGACATGAAGGAAGACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCA 58471 Query 260037 TCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCG 260096 | ||||||||| ||| || ||||| ||| | ||| ||| | || ||| | ||| Sbjct 58472 TGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACGCCCACCGTATCCGTGCCACTGGCT 58531 Query 260097 CCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTA 260156 |||| | || |||||||||||| || ||||| | | ||||||||||| || || | Sbjct 58532 CCTATATTGCCGGCACCAACGGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCA 58591 Query 260157 ACGACACGGCGCGCTACGTCGACCAG 260182 || |||| || ||||||||||||||| Sbjct 58592 ACAACACTGCTCGCTACGTCGACCAG 58617 >seq1701 Length=48026 Score = 138 bits (152), Expect = 2e-26 Identities = 209/296 (71%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACC---GGCGATTTGGGCGTCAGTGAGG 332866 ||||||||||| ||| || | ||||| ||| | ||| || |||| ||||| Sbjct 16465 ACCTTTTCGGCTTCGATGATTT---GCAGGAGACGCTTGACGACCTGCTCGTCGGTGAGT 16409 Query 332867 CGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG 332926 || | |||| |||||||| || || |||||| | |||||||| | | ||| | Sbjct 16408 CGGGCGTAGCGGAGGATGGCGCATCGTGACTGCAGCGGCTCGATGATCTTGTTGGACTGG 16349 Query 332927 TTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCC 332986 |||||||| | ||| || |||||||| |||| | ||||||| ||| || |||||| Sbjct 16348 TTGCAGGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATTTCCATTGTCCGGCGCAGGGCC 16289 Query 332987 TGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCG 333046 || ||||| | | || | || |||||||||||||||||||| || ||||||||| || Sbjct 16288 TGCTGGGCGCCTGATGTCATGCTGTCGGCCTCGTCGAGGATGACGAGCTTGTGGCGGCCC 16229 Query 333047 TGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102 || ||||| ||| | ||| |||| |||||| ||||| |||||||| Sbjct 16228 TGGGGCAGGGTGACCTTCTTCTGGGCGAAACCCTTGATGCGGTTGCGAACGACGTC 16173 >seq1058 Length=49244 Score = 109 bits (120), Expect = 8e-18 Identities = 119/154 (77%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 || ||||| |||||||| |||||||||||| | | || || || | ||| ||| ||| Sbjct 16574 AAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGC-TCTTC-CTTCGCCCAGC 16517 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 |||| || | ||| ||||| |||||||| ||||| ||| || ||| | |||||| Sbjct 16516 GGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCT 16457 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 | |||||||||||||| || |||||||||||||| Sbjct 16456 TCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCT 16423 Score = 91.5 bits (100), Expect = 2e-12 Identities = 174/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || ||||| || |||||| |||| ||| | ||||| | | |||| | ||||| || Sbjct 16313 ATTATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTAACCGAGGCTCTGCCTTGCGCT 16254 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| ||||||||||| ||| | | ||| |||||||| | | || || |||||||| | Sbjct 16253 CTCCTCGGCATGAACTCCAAC-TTGATGAAGCAGTACATCG-AGTTCGTTGCCGACCGTC 16196 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | | | || || ||| | || ||| |||| | | ||||||| || | ||| Sbjct 16195 TCTTGGTTGCTCTTGGCAAC-GACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATG 16137 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| ||||| || | |||||||||||||| || ||| |||| || ||| ||| Sbjct 16136 GAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTTGCCGACTACCAG 16077 Query 1456762 AAGGCCGGCGT 1456772 |||||||| || Sbjct 16076 AAGGCCGGTGT 16066 >seq682 Length=146227 Score = 89.7 bits (98), Expect = 7e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 334525 CATCGACGTTGGCGCCGGCGTCCTTGATGTCGACTATCGCGGCGAGGTTGGCGTCATGCT 334584 ||||||| |||||||||||| | || | |||||| |||||| |||| ||| | || Sbjct 29658 CATCGACACGGGCGCCGGCGTCATCGACGCCGACTACCGCGGCCAGGTCAAGGTCCTCCT 29599 Query 334585 TTTCAACCATACCGACGCCGACTATGTCGTCGGCNNNGGCGCACGCATCGCCCAGTTGCT 334644 |||||||| ||||| | |||| || |||| | |||| |||||||||||| | | Sbjct 29598 CTTCAACCACGCCGACACGGACTTTGAGGTCGCCGAGGGCGACCGCATCGCCCAGCTCAT 29539 Query 334645 CGTTGAAAAGATTGCCCATCCCGAGCCCGTGTGGGTCGACTCCCTGGACGACACCGAGCG 334704 | |||| || | |||||| ||| ||||| | || || || | || ||| Sbjct 29538 CATTGAGCGCATCTTCACCCCCGAGATCGTCGAGGTCGCCGAGCTCGAGGAGAGCGTGCG 29479 Query 334705 CGGCACCGGCGGCTTTGG 334722 |||| | ||||| ||||| Sbjct 29478 CGGCGCTGGCGGGTTTGG 29461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177543449697712