Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq791 113 4e-20
seq1821 105 6e-18
seq1741 105 6e-18
>seq791
Length=44334
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||| || |||| || |||||||| || || ||
Sbjct 42475 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 42534
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | || | | |||||||||| |||||| ||| | | |
Sbjct 42535 GATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 42594
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| ||| |||||||| | ||||| || || ||||||| || || ||
Sbjct 42595 GTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGAC 42654
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 42655 GAAGATCTGCAT 42666
>seq1821
Length=135001
Score = 105 bits (116), Expect = 6e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
|||| || |||||||| |||| | ||| || |||| || |||||||| || || || |
Sbjct 45972 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGA 45913
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
|||| ||||||||||| | || | || |||||||||| |||||| ||| | | |
Sbjct 45912 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 45853
Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726
| | ||||||| || || ||||| | || || || |||||||||| || ||||| |
Sbjct 45852 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 45793
Query 35727 A 35727
|
Sbjct 45792 A 45792
>seq1741
Length=26822
Score = 105 bits (116), Expect = 6e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| ||| || ||| || | || ||||||||||| || || ||
Sbjct 17161 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAG 17102
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
|| | ||||||||||| | ||||| | |||||| ||| |||||| ||||| |||
Sbjct 17101 ATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATCTTGGACTTCA-CGTT 17043
Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | |||||| || || ||||||| || || || || || || | ||| |||||
Sbjct 17042 GTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCAC 16983
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 16982 GAAGATCTGCAT 16971
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
||||| || | ||| |||||| ||||||||||| |||| | ||| || | || ||
Sbjct 16951 ACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCCTCA 16892
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|| ||||| || ||||| ||||| ||||||||||| | |||| || ||||||||||
Sbjct 16891 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGA 16832
Query 35648 ATCTT 35652
|||||
Sbjct 16831 ATCTT 16827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450777957462080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |