Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq791 123 3e-23
seq1741 111 2e-19
seq1821 107 2e-18
>seq791
Length=44334
Score = 123 bits (136), Expect = 3e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || ||||| || ||||| ||||| || |||||||||||| | |||| |
Sbjct 42449 AGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 42508
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| |||||||| || || || || |||| |||||||| ||||| || || || ||
Sbjct 42509 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCC 42568
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | ||||||||||| ||||| ||||| ||
Sbjct 42569 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTG 42628
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || | || || ||||| || |||||
Sbjct 42629 ATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666
>seq1741
Length=26822
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
||||| || || ||||||||||| || ||||||||||||| | |||| || || ||
Sbjct 17179 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCC 17120
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| || || || || || | ||||||||| ||||| || || || || || || ||
Sbjct 17119 AGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGG 17060
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | ||||| || || || || || | |||||| || ||
Sbjct 17059 ATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTG 17000
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || | ||| || ||||| || |||||
Sbjct 16999 CCAGTAAGAGTCTTCACGAAGATCTGCAT 16971
Score = 109 bits (120), Expect = 6e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || | ||| || || || ||||| || ||||||||||||
Sbjct 16683 CCACCACGGAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 16624
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | ||| || || || ||||| || ||||| | ||||||||||||||| ||
Sbjct 16623 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 16564
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || ||||| || ||||| ||| | || || || || || ||
Sbjct 16563 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGAGGACTCGACC 16504
Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689
|||||||| ||||| || |||||
Sbjct 16503 TCGAGAGTGATGGTCTTGCCGGT 16481
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| |||||||| ||||| ||||||||||||||| | |||| | || || || ||
Sbjct 16946 GTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCCTCAAGTTG 16887
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| ||||| |||||||||||||| || || || ||||| || || || ||||| ||
Sbjct 16886 CTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTT 16827
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
||||| ||| | || || || || || || || || || ||||| || || ||
Sbjct 16826 CGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 16767
Query 134690 TAAAGTTTTAACGA 134703
| || || ||||
Sbjct 16766 GAGGGTCTTGACGA 16753
>seq1821
Length=135001
Score = 107 bits (118), Expect = 2e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || |||||||||||| | |||| | ||| || ||||| ||||| || || |
Sbjct 45972 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGA 45913
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
|||| |||||||| ||||| || ||||| || || || || || || ||||| ||
Sbjct 45912 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 45853
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | |||||||| || || || || || |||||||| ||||| || | || || ||||
Sbjct 45852 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 45793
Query 134704 AA 134705
||
Sbjct 45792 AA 45791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505380862675520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |