Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq791 123 3e-23 seq1741 111 2e-19 seq1821 107 2e-18 >seq791 Length=44334 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||||| ||||| || |||||||||||| | |||| | Sbjct 42449 AGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 42508 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| || || || || |||| |||||||| ||||| || || || || Sbjct 42509 CCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCC 42568 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||||||||| ||||| ||||| || Sbjct 42569 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTG 42628 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 42629 ATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666 >seq1741 Length=26822 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || ||||||||||| || ||||||||||||| | |||| || || || Sbjct 17179 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCC 17120 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || || || || | ||||||||| ||||| || || || || || || || Sbjct 17119 AGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGG 17060 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | ||||| || || || || || | |||||| || || Sbjct 17059 ATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATTGTCTTG 17000 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||| || ||||| || ||||| Sbjct 16999 CCAGTAAGAGTCTTCACGAAGATCTGCAT 16971 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || || ||||| || |||||||||||| Sbjct 16683 CCACCACGGAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 16624 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || ||||| || ||||| | ||||||||||||||| || Sbjct 16623 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 16564 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | || || || || || || Sbjct 16563 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGAGGACTCGACC 16504 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 |||||||| ||||| || ||||| Sbjct 16503 TCGAGAGTGATGGTCTTGCCGGT 16481 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| |||||||| ||||| ||||||||||||||| | |||| | || || || || Sbjct 16946 GTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTGCGGCCATCCTCAAGTTG 16887 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| ||||| |||||||||||||| || || || ||||| || || || ||||| || Sbjct 16886 CTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTT 16827 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | || || || || || || || || || ||||| || || || Sbjct 16826 CGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 16767 Query 134690 TAAAGTTTTAACGA 134703 | || || |||| Sbjct 16766 GAGGGTCTTGACGA 16753 >seq1821 Length=135001 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | |||| | ||| || ||||| ||||| || || | Sbjct 45972 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGA 45913 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| ||||| || ||||| || || || || || || ||||| || Sbjct 45912 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 45853 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || || || || || |||||||| ||||| || | || || |||| Sbjct 45852 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 45793 Query 134704 AA 134705 || Sbjct 45792 AA 45791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505380862675520