Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1350 107 2e-18
>seq1350
Length=9027
Score = 107 bits (118), Expect = 2e-18
Identities = 253/381 (66%), Gaps = 11/381 (3%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| ||| | || |||||||| | | || || | ||| |||||||| ||||| ||
Sbjct 3009 CCCAAGATTATCAACGGTCCTGAGGTGCTTAACAAGTTTGTCGGTCAATCCGAAGAGAAC 2950
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547
| ||| |||| || || ||||| |||| | | || | |||| | | | |||
Sbjct 2949 ATCCGAAAGATGTTCGCGGATGCTGA-GAAGGAGTACAAGGAGAAGGGTGACCAGAGTGG 2891
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------ 19601
| | |||||||| || | ||||| |||| || |||| ||||||||||| ||
Sbjct 2890 TCTTCACATTATCATTTTCGATGAGCTGGATGCCGTCTGCAAGCAAAGAGGCTCCGGTGC 2831
Query 19602 ---TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658
|||| | ||| || ||||| ||||||||| || || || | || | |||||
Sbjct 2830 CGGAGGTGGTACTGGTGTCGGTGACAGTGTTGTCAACCAGCTTCTCACCAAGCTCGACGG 2771
Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718
|||| |||| || || || || | | || || ||||| || || ||| | || ||
Sbjct 2770 TGTTGACCAGCTCAACAACATCCTCCTCATCGGTATGACCAACCGAAAGGACATGATCGA 2711
Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778
|| | || || |||||||| ||||| | || | ||||||| ||| ||| | ||
Sbjct 2710 TGAGGCGCTTTTGCGTCCCGGTCGTTTGGAGGTTCAGTTGGAAATTAGCTTGCCCAACGA 2651
Query 19779 ATGTGGACGTGTGGAAATTTT 19799
| ||||| |||||| ||
Sbjct 2650 AGACGGACGCAAGGAAATCTT 2630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397442553069880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |