Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1350 107 2e-18 >seq1350 Length=9027 Score = 107 bits (118), Expect = 2e-18 Identities = 253/381 (66%), Gaps = 11/381 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||| | || |||||||| | | || || | ||| |||||||| ||||| || Sbjct 3009 CCCAAGATTATCAACGGTCCTGAGGTGCTTAACAAGTTTGTCGGTCAATCCGAAGAGAAC 2950 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTC 19547 | ||| |||| || || ||||| |||| | | || | |||| | | | ||| Sbjct 2949 ATCCGAAAGATGTTCGCGGATGCTGA-GAAGGAGTACAAGGAGAAGGGTGACCAGAGTGG 2891 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------ 19601 | | |||||||| || | ||||| |||| || |||| ||||||||||| || Sbjct 2890 TCTTCACATTATCATTTTCGATGAGCTGGATGCCGTCTGCAAGCAAAGAGGCTCCGGTGC 2831 Query 19602 ---TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGG 19658 |||| | ||| || ||||| ||||||||| || || || | || | ||||| Sbjct 2830 CGGAGGTGGTACTGGTGTCGGTGACAGTGTTGTCAACCAGCTTCTCACCAAGCTCGACGG 2771 Query 19659 TGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGA 19718 |||| |||| || || || || | | || || ||||| || || ||| | || || Sbjct 2770 TGTTGACCAGCTCAACAACATCCTCCTCATCGGTATGACCAACCGAAAGGACATGATCGA 2711 Query 19719 CAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGA 19778 || | || || |||||||| ||||| | || | ||||||| ||| ||| | || Sbjct 2710 TGAGGCGCTTTTGCGTCCCGGTCGTTTGGAGGTTCAGTTGGAAATTAGCTTGCCCAACGA 2651 Query 19779 ATGTGGACGTGTGGAAATTTT 19799 | ||||| |||||| || Sbjct 2650 AGACGGACGCAAGGAAATCTT 2630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397442553069880