Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq1058 98.7 3e-15
seq1932 96.9 1e-14
>seq1058
Length=49244
Score = 98.7 bits (108), Expect = 3e-15
Identities = 122/166 (73%), Gaps = 1/166 (1%)
Strand=Plus/Minus
Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758
||||| | |||| || || || || || | ||||| || | || || ||||| || |
Sbjct 16527 CTTCGCCCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGT-GCCT 16469
Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818
| ||||||||||||||| | || |||||||| || |||| |||||||||||| ||||
Sbjct 16468 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACG 16409
Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864
| || ||| || || |||||| | || |||||| ||||| ||
Sbjct 16408 AGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCT 16363
>seq1932
Length=74184
Score = 96.9 bits (106), Expect = 1e-14
Identities = 215/317 (68%), Gaps = 12/317 (4%)
Strand=Plus/Plus
Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037
|| || ||| | ||||| ||||||||| |||||||||||||| || || ||| |||
Sbjct 58570 ATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAG 58629
Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTT- 255093
|| || || || ||| |||||||||| ||||| ||||||||||| | |||| |||
Sbjct 58630 CGTCCTGGTGCCTTCGCCATCTACCTTGAGCCTTGGCACGCCGATGTCTTTGA---GTTC 58686
Query 255094 -TTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCG 255152
| ||| || | | || ||||| |||||| | || || ||| | | | ||
Sbjct 58687 ATGGACT--TGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGTGACCTTTTCCTCG 58744
Query 255153 CTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTC 255211
| ||||| | ||||||||| ||| | || || | || ||| |||| ||||
Sbjct 58745 CCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA-ACGCCGAATGGACCCTC 58803
Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTG 255271
|||||||||||| | ||||| || | |||| | || || ||||| || ||
Sbjct 58804 ATGTGTCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTCGAGGCCTTG 58863
Query 255272 TATCTGGAGTACGAGCG 255288
|| | ||||||||||
Sbjct 58864 TACGAGAAGTACGAGCG 58880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588279506859320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |