Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1058 98.7 3e-15 seq1932 96.9 1e-14 >seq1058 Length=49244 Score = 98.7 bits (108), Expect = 3e-15 Identities = 122/166 (73%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| | |||| || || || || || | ||||| || | || || ||||| || | Sbjct 16527 CTTCGCCCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGT-GCCT 16469 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||||||||||||| | || |||||||| || |||| |||||||||||| |||| Sbjct 16468 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACG 16409 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 | || ||| || || |||||| | || |||||| ||||| || Sbjct 16408 AGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCT 16363 >seq1932 Length=74184 Score = 96.9 bits (106), Expect = 1e-14 Identities = 215/317 (68%), Gaps = 12/317 (4%) Strand=Plus/Plus Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037 || || ||| | ||||| ||||||||| |||||||||||||| || || ||| ||| Sbjct 58570 ATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAG 58629 Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTT- 255093 || || || || ||| |||||||||| ||||| ||||||||||| | |||| ||| Sbjct 58630 CGTCCTGGTGCCTTCGCCATCTACCTTGAGCCTTGGCACGCCGATGTCTTTGA---GTTC 58686 Query 255094 -TTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCG 255152 | ||| || | | || ||||| |||||| | || || ||| | | | || Sbjct 58687 ATGGACT--TGCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCTCGTGACCTTTTCCTCG 58744 Query 255153 CTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTC 255211 | ||||| | ||||||||| ||| | || || | || ||| |||| |||| Sbjct 58745 CCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGA-ACGCCGAATGGACCCTC 58803 Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTG 255271 |||||||||||| | ||||| || | |||| | || || ||||| || || Sbjct 58804 ATGTGTCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGCGAGGAGTTCGAGGCCTTG 58863 Query 255272 TATCTGGAGTACGAGCG 255288 || | |||||||||| Sbjct 58864 TACGAGAAGTACGAGCG 58880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588279506859320