Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 219 5e-52
seq1058 140 4e-28
>seq1932
Length=74184
Score = 219 bits (242), Expect = 5e-52
Identities = 1152/1821 (63%), Gaps = 65/1821 (4%)
Strand=Plus/Minus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|| ||||||||||| ||||||||||| || |||||||| || | |||||| ||
Sbjct 59975 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATGCATGCTGGTG 59916
Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956
| |||| | || || | |||| || ||| | ||||| || |||||||||
Sbjct 59915 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAG 59856
Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013
|| ||||| || ||||| | | || | | || | |||||||| || |||
Sbjct 59855 GCACCACGATCGGCAGCCATCTGGA---CAACGGTGCGCTGGGAGATTTCCCAGACGGTC 59799
Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073
|||| || ||| | || | || || | ||| || || | ||| ||| | |
Sbjct 59798 TTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGAACCATTCTC- 59740
Query 118074 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 118130
| | |||| | | |||||| | | ||||| | || || | ||||||||
Sbjct 59739 --GGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACGAGATCCTTA 59682
Query 118131 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190
| || |||||||| ||||| || || || || | | | ||||| |||
Sbjct 59681 AGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTG 59622
Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250
| ||||| ||||| |||||||| ||||| |||||||| |||| |||||||| || |||
Sbjct 59621 GAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGC 59562
Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310
||||| || | || || ||||| || | ||| | |||| | || | ||||| |||| |
Sbjct 59561 ATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAG 59502
Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370
|||||||| || | | || | | |||||| || |||| |||||||| |||
Sbjct 59501 TCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGG 59442
Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAG 118427
|| || || ||||| | || || | ||||| || |||| || ||||
Sbjct 59441 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGAC 59382
Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487
| | | || || ||||| || || || || ||||| || | | |||
Sbjct 59381 ATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCGAGCC 59325
Query 118488 TCGTCGGAATC-AAACGC--GAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544
|| || || ||| || | || || || || |||| || ||||| ||||||
Sbjct 59324 TCAGGAGACTCGAAAGGCATGCGTAGGGC---AAGGAAGGCATCAGCAAGACCCTGGACA 59268
Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAA 118601
|| ||||| || || || || | ||| || || ||||| ||| ||||| ||
Sbjct 59267 CCAAGGCCGATGGGACGGTGACGCATGTTGCTGTTGCGAGC---CTCAGGAACGGGGTAG 59211
Query 118602 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 118661
|| ||| || | | | || || || | || |||| |||| || ||||||
Sbjct 59210 TGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGC 59151
Query 118662 TTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT---ACTTAGGAAGGGCGATTGAC 118718
|| | | |||| | | | ||| | | | || | |||| ||||| | ||
Sbjct 59150 TTCTGGAAATCGTA---GACACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAG 59094
Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778
|||| || || |||| |||||| | |||||| || || || ||||| |
Sbjct 59093 GCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGA 59034
Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 118838
|| || || ||||| || | |||||| || || ||| ||| || ||||||
Sbjct 59033 TTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTG 58974
Query 118839 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATC 118897
||||||||| | || | || ||||| || || | || ||| || || | ||| | | ||
Sbjct 58973 TAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTC 58914
Query 118898 GGCAGCTGGCACAGTGGCGTTGGCTCGCCCCT---CTTC---CTCGTACTTTGTGTAGAG 118951
| || | ||| ||| || |||| |||| ||||||||| ||| |
Sbjct 58913 TGGGCCTTGA----TGGTCTTG---CGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAA 58861
Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAG 119011
||| || ||||| || || | || | || || || || | || || | |||
Sbjct 58860 GGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAG 58801
Query 119012 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 119071
| ||||| | || ||| || | ||||||||| || || ||||||||||| ||
Sbjct 58800 GGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAG 58741
Query 119072 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 119131
||| || || ||| || | || || | || || || ||||| |||| || ||
Sbjct 58740 GAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTC 58681
Query 119132 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA----- 119186
| || ||| |||||||| || || ||||| | |||| | || | ||||
Sbjct 58680 AAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACC---AGGACGCTTGTT 58624
Query 119187 -CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245
||| |||||| || || | |||||| ||| || ||||||||||| ||||||| |||
Sbjct 58623 GCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACC 58564
Query 119246 ATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTG 119305
| || ||| || || || |||| || | |||| | || | |||| ||
Sbjct 58563 GTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTT 58504
Query 119306 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 119365
| |||||| || || ||| ||| ||||| ||||| | |||| || |||||||
Sbjct 58503 GAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGAT 58444
Query 119366 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-G 119424
|| || || ||||| |||| | ||| ||||||||| |||| || | ||| |
Sbjct 58443 ACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAG 58385
Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTT 119482
| ||||| ||||||||||| || || | |||||| ||| | | |||| ||||||
Sbjct 58384 GGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAG 58327
Query 119483 GTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542
|| ||||||||| | |||| || || || || || |||| | ||| |||||
Sbjct 58326 GTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACACGCAT 58267
Query 119543 AAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTC 119602
| ||||| || ||| | || | | || |||||| || | ||||| ||||
Sbjct 58266 GATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTC 58207
Query 119603 CAAGGTCTTGAGACCAAAATA 119623
|| ||| |||| ||| || ||
Sbjct 58206 CAGGGTTTTGAAACCGAAGTA 58186
>seq1058
Length=49244
Score = 140 bits (154), Expect = 4e-28
Identities = 306/453 (68%), Gaps = 8/453 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| |||||||| |||||||| ||||| ||| | | | ||| ||||||||
Sbjct 16081 TAGTCGGCAACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 16140
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846
|| ||||| ||||| || || | | || | | |||| | ||||||
Sbjct 16141 AAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCAACCAAGAGACG 16199
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | ||| |||| ||||||| |||| | ||||||||| |||| ||| ||
Sbjct 16200 GTCGGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGCA 16259
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
|| || || || | |||| ||| |||||| | || || || | ||| | |
Sbjct 16260 AGGCAGAGCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAATGTCCTC 16319
Query 129967 AATGGTCTCCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
|||| || | ||| ||| | | || | || | ||||| || |||||| ||
Sbjct 16320 AATGACCTGCTTGCTAGGGCGGTGCTTGAGGTGAGAGTACAAGAGG--CA-GGCAAAGTC 16376
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
|||||||||||| |||||||||||||| || || |||||| |||||| ||||||||
Sbjct 16377 GGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 16436
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
||| |||||||| | |||||| || | || | || ||||||||| ||||| ||
Sbjct 16437 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGAC 16496
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176
| ||||| |||| || |||| || |||||
Sbjct 16497 AGCGGCGAAGGCAACCAGCCGCTGGGCGAAGGA 16529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618413740298560
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