Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1932 219 5e-52 seq1058 140 4e-28 >seq1932 Length=74184 Score = 219 bits (242), Expect = 5e-52 Identities = 1152/1821 (63%), Gaps = 65/1821 (4%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| ||||||||||| || |||||||| || | |||||| || Sbjct 59975 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATGCATGCTGGTG 59916 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | || || | |||| || ||| | ||||| || ||||||||| Sbjct 59915 ATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAG 59856 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013 || ||||| || ||||| | | || | | || | |||||||| || ||| Sbjct 59855 GCACCACGATCGGCAGCCATCTGGA---CAACGGTGCGCTGGGAGATTTCCCAGACGGTC 59799 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| || ||| | || | || || | ||| || || | ||| ||| | | Sbjct 59798 TTGTACAGAGCCTTGACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGAACCATTCTC- 59740 Query 118074 TTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 118130 | | |||| | | |||||| | | ||||| | || || | |||||||| Sbjct 59739 --GGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACGAGATCCTTA 59682 Query 118131 ACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 | || |||||||| ||||| || || || || | | | ||||| ||| Sbjct 59681 AGCAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGAACACGGCGCTGGTAGATGTTG 59622 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||| ||||| |||||||| ||||| |||||||| |||| |||||||| || ||| Sbjct 59621 GAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGAGGCAGTAGGC 59562 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 ||||| || | || || ||||| || | ||| | |||| | || | ||||| |||| | Sbjct 59561 ATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTCCTTCAGAGAG 59502 Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370 |||||||| || | | || | | |||||| || |||| |||||||| ||| Sbjct 59501 TCCCAGTCCCAGAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGAAGGATACCCTGG 59442 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAG 118427 || || || ||||| | || || | ||||| || |||| || |||| Sbjct 59441 GAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTGGCCAGTTGAACGGAC 59382 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487 | | | || || ||||| || || || || ||||| || | | ||| Sbjct 59381 ATGGTC---AGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTGAGATCGCGAGCC 59325 Query 118488 TCGTCGGAATC-AAACGC--GAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544 || || || ||| || | || || || || |||| || ||||| |||||| Sbjct 59324 TCAGGAGACTCGAAAGGCATGCGTAGGGC---AAGGAAGGCATCAGCAAGACCCTGGACA 59268 Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAA 118601 || ||||| || || || || | ||| || || ||||| ||| ||||| || Sbjct 59267 CCAAGGCCGATGGGACGGTGACGCATGTTGCTGTTGCGAGC---CTCAGGAACGGGGTAG 59211 Query 118602 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 118661 || ||| || | | | || || || | || |||| |||| || |||||| Sbjct 59210 TGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTCGTGAAGC 59151 Query 118662 TTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT---ACTTAGGAAGGGCGATTGAC 118718 || | | |||| | | | ||| | | | || | |||| ||||| | || Sbjct 59150 TTCTGGAAATCGTA---GACACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAGAGAG 59094 Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778 |||| || || |||| |||||| | |||||| || || || ||||| | Sbjct 59093 GCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGA 59034 Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 118838 || || || ||||| || | |||||| || || ||| ||| || |||||| Sbjct 59033 TTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTG 58974 Query 118839 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATC 118897 ||||||||| | || | || ||||| || || | || ||| || || | ||| | | || Sbjct 58973 TAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTC 58914 Query 118898 GGCAGCTGGCACAGTGGCGTTGGCTCGCCCCT---CTTC---CTCGTACTTTGTGTAGAG 118951 | || | ||| ||| || |||| |||| ||||||||| ||| | Sbjct 58913 TGGGCCTTGA----TGGTCTTG---CGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAA 58861 Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAG 119011 ||| || ||||| || || | || | || || || || | || || | ||| Sbjct 58860 GGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAG 58801 Query 119012 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 119071 | ||||| | || ||| || | ||||||||| || || ||||||||||| || Sbjct 58800 GGTCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAG 58741 Query 119072 GAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 119131 ||| || || ||| || | || || | || || || ||||| |||| || || Sbjct 58740 GAAAAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTC 58681 Query 119132 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA----- 119186 | || ||| |||||||| || || ||||| | |||| | || | |||| Sbjct 58680 AAAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACC---AGGACGCTTGTT 58624 Query 119187 -CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 ||| |||||| || || | |||||| ||| || ||||||||||| ||||||| ||| Sbjct 58623 GCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACC 58564 Query 119246 ATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTG 119305 | || ||| || || || |||| || | |||| | || | |||| || Sbjct 58563 GTTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTT 58504 Query 119306 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 119365 | |||||| || || ||| ||| ||||| ||||| | |||| || ||||||| Sbjct 58503 GAGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGAT 58444 Query 119366 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-G 119424 || || || ||||| |||| | ||| ||||||||| |||| || | ||| | Sbjct 58443 ACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGCTG-GCACTGAG 58385 Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTT 119482 | ||||| ||||||||||| || || | |||||| ||| | | |||| |||||| Sbjct 58384 GGGTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAG 58327 Query 119483 GTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542 || ||||||||| | |||| || || || || || |||| | ||| ||||| Sbjct 58326 GTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGACACGCAT 58267 Query 119543 AAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTC 119602 | ||||| || ||| | || | | || |||||| || | ||||| |||| Sbjct 58266 GATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTCAGCAGGTATGATCTCTC 58207 Query 119603 CAAGGTCTTGAGACCAAAATA 119623 || ||| |||| ||| || || Sbjct 58206 CAGGGTTTTGAAACCGAAGTA 58186 >seq1058 Length=49244 Score = 140 bits (154), Expect = 4e-28 Identities = 306/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| |||||||| |||||||| ||||| ||| | | | ||| |||||||| Sbjct 16081 TAGTCGGCAACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATG 16140 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 || ||||| ||||| || || | | || | | |||| | |||||| Sbjct 16141 AAGTCAAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCAACCAAGAGACG 16199 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | ||| |||| ||||||| |||| | ||||||||| |||| ||| || Sbjct 16200 GTCGGCAACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGCA 16259 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| ||| |||||| | || || || | ||| | | Sbjct 16260 AGGCAGAGCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAATGTCCTC 16319 Query 129967 AATGGTCTCCGTGCCAGGTCTAT---TGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 |||| || | ||| ||| | | || | || | ||||| || |||||| || Sbjct 16320 AATGACCTGCTTGCTAGGGCGGTGCTTGAGGTGAGAGTACAAGAGG--CA-GGCAAAGTC 16376 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||||||||| |||||||||||||| || || |||||| |||||| |||||||| Sbjct 16377 GGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 16436 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | || ||||||||| ||||| || Sbjct 16437 ACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGAC 16496 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 | ||||| |||| || |||| || ||||| Sbjct 16497 AGCGGCGAAGGCAACCAGCCGCTGGGCGAAGGA 16529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618413740298560