Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 237 2e-57
seq1058 129 7e-25
>seq1932
Length=74184
Score = 237 bits (262), Expect = 2e-57
Identities = 904/1402 (64%), Gaps = 49/1402 (3%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || || |||| || || || || |||| |||
Sbjct 58252 CCGCAGCACATGATCATGCGTGTCGCAGTCGGCATCTGGGGTGACGATGTTGAGCGCGTC 58311
Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||| ||| || |||||| |||| | | ||| ||||| | || || ||||
Sbjct 58312 ATTGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCCACACTCT 58369
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || ||||| || ||| |||| |||||||| ||| || ||||| |
Sbjct 58370 TCAACGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAG 58429
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|||| || | |||||||| | || || | | || || ||||| ||| |||||
Sbjct 58430 ACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 58489
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519
| || ||||| | || ||| | | | |||| | || |||| || || |
Sbjct 58490 GTGGCATTGGTCTCAACGCCCACCGTATCCGTGCCACTGGCTCCTATATTGCCGGCACCA 58549
Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579
| || || | ||| | ||||| |||||||| || || ||| ||| || ||||| |
Sbjct 58550 ACGGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACG 58609
Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
| | || | ||| ||||| || | |||| |||| |||||||| ||||
Sbjct 58610 TCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGAGCCTTGGC 58666
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|||| ||| || | |||||| | || ||||| ||||| || | ||||||| || |
Sbjct 58667 ACGCCGATGTCTTTGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-T 58725
Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752
|| || || || ||| ||| |||||||| || ||||| |||||||||||||| ||| ||
Sbjct 58726 GCTCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAG 58785
Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812
| | | | ||| | ||| | ||||| || || || || || | || | ||
Sbjct 58786 AACGCCGAATGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGC 58845
Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCG 104866
|||||||| || ||| | ||| ||||||||| |||| | ||||| |||
Sbjct 58846 GAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGCAAGACCATC 58905
Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926
| || |||| || | ||| | || || ||| || |||| || ||||| || |
Sbjct 58906 AAGG-CCCAGAAGC-----TTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAAC 58959
Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986
|| | |||||||||||| |||||| |||| ||||| || || ||||| | ||
Sbjct 58960 CCCTTCATGCTTTACAAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAACCTCGGAACC 59019
Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046
||| || ||||||||||| || || ||| | || | | | |||||| |||
Sbjct 59020 ATCCGCAGCTCCAATCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAGGTTGCT 59079
Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATT 105105
|| || ||| | || || | || || || | | || || | || || | | |
Sbjct 59080 GTATGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAACGAGGGTGTC-TA 59138
Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165
|||| | || || ||||| || || | || | ||||| |||| | ||
Sbjct 59139 CGATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTCCGCAACCTGAACAAGATCAT 59198
Query 105166 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222
|||| || |||||||| |||| ||||| || || ||| | ||||||||
Sbjct 59199 TGATGTCAACCACTACCCCGTTCCTGAG---GCTCGCAACAGCAACATGCGTCACCGTCC 59255
Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA----- 105277
|| || || ||||| |||||||| || |||| | ||| ||| | | |||||
Sbjct 59256 CATCGGCCTTGGTGTCCAGGGTCTTGCTGATG----CCTTCCTTG-CCCTACGCATGCCT 59310
Query 105278 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCC 105337
|| || || || || || |||| | || || |||||||| || |||||
Sbjct 59311 TTCGAGTCTCCTGAGGCTCGCGATCTCAACAAGAAGATTTTCGAGACCATCTACCACGCT 59370
Query 105338 GCTCT--TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGG 105395
||||| | | ||||| | | | ||| || || ||| | || || | ||||
Sbjct 59371 GCTCTGACCATGTCCGTTCA-ACTGGCCAG-GGAGGAGGGTACCTACTCCACGTACGAGG 59428
Query 105396 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTC 105455
| || || || || || | ||||| | || |||||| | | || || |
Sbjct 59429 GCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACC 59488
Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515
|| |||||||| |||| ||||| | |||||||| | ||| |||| |||||||| |
Sbjct 59489 TCTGGGACTGGGACTCTCTGAAGGAGCAGATCAAGGAACACGGTGTTCGCAACAGTCTGC 59548
Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 105575
| | ||||| ||||| || |||||||| | || |||||||| || || || ||||| |
Sbjct 59549 TTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCG 59608
Query 105576 AACCCTACACGACGAACATCTA 105597
| |||||||| | ||||||||
Sbjct 59609 AGCCCTACACTTCCAACATCTA 59630
>seq1058
Length=49244
Score = 129 bits (142), Expect = 7e-25
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT-GATACAAAGTCGCGTTCCTTTGC 94802
|||| ||||| || || ||||| |||||||| | | || | | | |||||| ||
Sbjct 16580 ATTCGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGCTC-TTCCTTCGC 16522
Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862
|||| || | || || || ||| ||||||||||||||| ||| ||||| | |
Sbjct 16521 CCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTC 16462
Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922
|| | |||||||||||||| ||||||||||| ||||| ||||||||||||||| ||
Sbjct 16461 CATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCAT 16402
Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||| ||||| ||||| |||||| || |||||
Sbjct 16401 CTCCCGTGATGAGGGTCTCCACACCGACTTTGC 16369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583240560850240
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