Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1932 237 2e-57 seq1058 129 7e-25 >seq1932 Length=74184 Score = 237 bits (262), Expect = 2e-57 Identities = 904/1402 (64%), Gaps = 49/1402 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||| || || || || |||| ||| Sbjct 58252 CCGCAGCACATGATCATGCGTGTCGCAGTCGGCATCTGGGGTGACGATGTTGAGCGCGTC 58311 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || |||||| |||| | | ||| ||||| | || || |||| Sbjct 58312 ATTGAGACCTACAACCTCATGTCCAGCAAGTTCT--TCACCCACGCCTCCCCCACACTCT 58369 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || ||| |||| |||||||| ||| || ||||| | Sbjct 58370 TCAACGCCGGTACCCCTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAG 58429 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| || | |||||||| | || || | | || || ||||| ||| ||||| Sbjct 58430 ACTCCATTGAGGGTATCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTG 58489 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | || ||||| | || ||| | | | |||| | || |||| || || | Sbjct 58490 GTGGCATTGGTCTCAACGCCCACCGTATCCGTGCCACTGGCTCCTATATTGCCGGCACCA 58549 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | ||| | ||||| |||||||| || || ||| ||| || ||||| | Sbjct 58550 ACGGCACCTCTAACGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACG 58609 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| ||||| || | |||| |||| |||||||| |||| Sbjct 58610 TCGACCAGGGTGGCAACAAGCGTCCT---GGTGCCTTCGCCATCTACCTTGAGCCTTGGC 58666 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | |||||| | || ||||| ||||| || | ||||||| || | Sbjct 58667 ACGCCGATGTCTTTGAGTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-T 58725 Query 104694 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || || || ||| ||| |||||||| || ||||| |||||||||||||| ||| || Sbjct 58726 GCTCGTGACCTTTTCCTCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAG 58785 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | | | | ||| | ||| | ||||| || || || || || | || | || Sbjct 58786 AACGCCGAATGGACCCTCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGACTGCTACGGC 58845 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCG 104866 |||||||| || ||| | ||| ||||||||| |||| | ||||| ||| Sbjct 58846 GAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGCAAGACCATC 58905 Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || |||| || | ||| | || || ||| || |||| || ||||| || | Sbjct 58906 AAGG-CCCAGAAGC-----TTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAAC 58959 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||||||||| |||||| |||| ||||| || || ||||| | || Sbjct 58960 CCCTTCATGCTTTACAAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAACCTCGGAACC 59019 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| || ||||||||||| || || ||| | || | | | |||||| ||| Sbjct 59020 ATCCGCAGCTCCAATCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAGGTTGCT 59079 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATT 105105 || || ||| | || || | || || || | | || || | || || | | | Sbjct 59080 GTATGCAACTTGGCCTCTCTTGCCCTGCCTACCTTCGTTGACTACAACGAGGGTGTC-TA 59138 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 |||| | || || ||||| || || | || | ||||| |||| | || Sbjct 59139 CGATTTCCAGAAGCTTCACGAGGTCACTCAGGTCGTTGTCCGCAACCTGAACAAGATCAT 59198 Query 105166 TGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 |||| || |||||||| |||| ||||| || || ||| | |||||||| Sbjct 59199 TGATGTCAACCACTACCCCGTTCCTGAG---GCTCGCAACAGCAACATGCGTCACCGTCC 59255 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA----- 105277 || || || ||||| |||||||| || |||| | ||| ||| | | ||||| Sbjct 59256 CATCGGCCTTGGTGTCCAGGGTCTTGCTGATG----CCTTCCTTG-CCCTACGCATGCCT 59310 Query 105278 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCC 105337 || || || || || || |||| | || || |||||||| || ||||| Sbjct 59311 TTCGAGTCTCCTGAGGCTCGCGATCTCAACAAGAAGATTTTCGAGACCATCTACCACGCT 59370 Query 105338 GCTCT--TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGG 105395 ||||| | | ||||| | | | ||| || || ||| | || || | |||| Sbjct 59371 GCTCTGACCATGTCCGTTCA-ACTGGCCAG-GGAGGAGGGTACCTACTCCACGTACGAGG 59428 Query 105396 GTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTC 105455 | || || || || || | ||||| | || |||||| | | || || | Sbjct 59429 GCTCCCCTATCTCCCAGGGTATCCTTCAGTACGACATGTGGAATGTCAAGCCCTCTGACC 59488 Query 105456 ACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCC 105515 || |||||||| |||| ||||| | |||||||| | ||| |||| |||||||| | Sbjct 59489 TCTGGGACTGGGACTCTCTGAAGGAGCAGATCAAGGAACACGGTGTTCGCAACAGTCTGC 59548 Query 105516 TCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 105575 | | ||||| ||||| || |||||||| | || |||||||| || || || ||||| | Sbjct 59549 TTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAACAACGAGTGCTTCG 59608 Query 105576 AACCCTACACGACGAACATCTA 105597 | |||||||| | |||||||| Sbjct 59609 AGCCCTACACTTCCAACATCTA 59630 >seq1058 Length=49244 Score = 129 bits (142), Expect = 7e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT-GATACAAAGTCGCGTTCCTTTGC 94802 |||| ||||| || || ||||| |||||||| | | || | | | |||||| || Sbjct 16580 ATTCGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCAGCGACGATAGCTC-TTCCTTCGC 16522 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 |||| || | || || || ||| ||||||||||||||| ||| ||||| | | Sbjct 16521 CCAGCGGCTGGTTGCCTTCGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTC 16462 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || | |||||||||||||| ||||||||||| ||||| ||||||||||||||| || Sbjct 16461 CATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCAT 16402 Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||| ||||| |||||| || ||||| Sbjct 16401 CTCCCGTGATGAGGGTCTCCACACCGACTTTGC 16369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583240560850240