Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1741 134 4e-26 seq360 131 5e-25 seq791 96.9 1e-14 >seq1741 Length=26822 Score = 134 bits (148), Expect = 4e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| | || || || ||||| || ||||| || || || Sbjct 16973 CATACCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTC 16914 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 |||| || || ||||| |||||||| || ||||||||||| | ||| ||||| ||||| Sbjct 16913 GGATAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGG 16854 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || | || ||||| || || | |||||| | || Sbjct 16853 GGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTC 16794 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || ||||| || | ||||| || || || || || || Sbjct 16793 GACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 16755 Score = 114 bits (126), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | || || |||||||| || || || || | Sbjct 16691 TTTGCATACCACCACGGAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGT 16632 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || |||||||| || ||||| || || ||||| ||||||| Sbjct 16631 AGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGAT 16572 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || |||||||| || | || || || || || | |||||| | Sbjct 16571 CGGGGGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGAGG 16512 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || || || || | ||||| ||||| Sbjct 16511 ACTCGACCTCGAGAGTGATGGTCTTGCCGGT 16481 >seq360 Length=39165 Score = 131 bits (144), Expect = 5e-25 Identities = 456/707 (64%), Gaps = 6/707 (1%) Strand=Plus/Plus Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 ||| | ||||| || ||||| || || || | |||||| || || || || || || Sbjct 33063 GTTGTCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCCGGT 33122 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 |||||| || | || || || | || || || || || || ||||| || ||||| Sbjct 33123 CTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCTGCCATTGCC 33182 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||||| || | | || || || |||| || || ||| | |||||| Sbjct 33183 TACGGTCTTGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTGGT 33242 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 ||||| || ||||| || || || || |||| ||||| || || || || || | || Sbjct 33243 GGTACCTTCGATGTGTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACC 33302 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 |||||||| || || | ||||| || || || || || ||||||||| || || || Sbjct 33303 GCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTCGTC 33362 Query 349913 AAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCG 349971 || || || || || ||||| || | ||| | || | | || |||| || Sbjct 33363 AACGAGTTCAAACG-CAAGCACAAGAAGGATCTGTCCTCCAACGCCCGTGCCCTGCGCCG 33421 Query 349972 CCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTAT 350031 || | || || || || ||||| ||||| || | || || || |||| ||||| || Sbjct 33422 TCTTCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCCAT 33481 Query 350032 TGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTT 350091 || || || ||||| || || | || |||| | || || || |||||||| || Sbjct 33482 CGAGATCGACTCTCTGTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGCTT 33541 Query 350092 TGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAA 350151 || || | || ||| || || | | || || | || || || || | | Sbjct 33542 CGAGGAGCTCTGCCAGGACCTGTTCCGCTCTACCATCCAGCCCGTCGACCGTGTCCTCAC 33601 Query 350152 AGATGCAAAAATGTCCAAAAAT--CAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACA 350209 || || || ||| | || | ||| | | || | || | || || ||||| || Sbjct 33602 CGACGC--TAAGGTCGACAAGTCCCAGGTCCACGAGATCGTCCTGGTCGGAGGTTCCACC 33659 Query 350210 CGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGA 350269 ||||| || ||||| || | | || || | || |||||||| || || | Sbjct 33660 CGTATCCCTCGTGTTCAGAAGCTCATCTCCGACTACTTCAATGGCAAGGAGCCCAACAAG 33719 Query 350270 TCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 || || || || ||||| |||||||| || || || ||||| ||||| Sbjct 33720 TCCATCAACCCCGATGAGGCTGTTGCCTACGGCGCCGCTGTCCAGGC 33766 >seq791 Length=44334 Score = 96.9 bits (106), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 42436 CATACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 42495 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || ||||| || ||||| || || ||||| || || Sbjct 42496 GGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGG 42555 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || ||||| || || | || || | || Sbjct 42556 GGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTC 42615 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 42616 CACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515200506189128