Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1932 259 5e-64 seq1521 105 7e-18 seq1058 100 3e-16 >seq1932 Length=74184 Score = 259 bits (286), Expect = 5e-64 Identities = 519/761 (68%), Gaps = 20/761 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || ||| |||||||| ||| ||| |||||| ||| Sbjct 58265 TCATGCGTGTCGCAGTCGGCATCTGGGGTGACGATGTTGAGCGCGTCATTGAGACCTACA 58324 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||| ||| || |||||| | || || || |||||||| ||||| Sbjct 58325 ACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACACTCTTCAACGCCGGTACCC 58384 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||| ||| |||| |||||||| || | |||||||| ||||| || || || | Sbjct 58385 CTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCCATTGAGGGTA 58444 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| || ||| ||||||||| | | ||||| || ||| || Sbjct 58445 TCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCA 58504 Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || || | | ||| |||||| | ||| | || || || |||||| | | | Sbjct 58505 AC-GCCC-ACCGTATCCGTGCCACTGGCTCCTATATTGCCGGCACCAACGGCACCTCTAA 58562 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || | || ||||| || |||||||||||||| || || |||||| |||||||||| Sbjct 58563 CGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGG 58622 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | |||||||||||||| ||||| ||||||||||| | | || Sbjct 58623 CAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCTTGGCACGCCGATGTCTTTGA 58682 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669 ||| | || |||| ||| || || | || ||| | || ||| |||||||| || Sbjct 58683 GTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGCTCGTGACCTTTTCC 58741 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || ||||| || || || |||||| | | || |||||| ||| || ||| || Sbjct 58742 TCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAATGGACCC 58801 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 | ||||| || ||||||||||||||||| | | || |||||| |||||||| | | Sbjct 58802 TCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGACTG-CTACGGCGAGGAGTTCGAGGCC 58860 Query 53789 ATGTATCGGACGTA------CGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842 |||| || ||| || || |||| ||| |||| ||||||| | Sbjct 58861 TTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGC------AAGACCATCAAGGCCCAG 58914 Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902 || | ||| | || |||||| || ||| ||||| || | || | |||| ||| Sbjct 58915 AAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCCCTTCATGCTTTAC 58974 Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 ||||| | | ||| |||||||||||||||||| |||| Sbjct 58975 AAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAACCTCGG 59015 Score = 102 bits (112), Expect = 9e-17 Identities = 297/449 (66%), Gaps = 15/449 (3%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| ||||| || || || ||||| || || || || | |||||| |||||||| Sbjct 59536 CGCAACAGTCTGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAAC 59595 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| |||||||||||| |||||| || || || ||| Sbjct 59596 AACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGCCGTGTTCTTGCCGGCGAG 59655 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| || | ||||| || | || | ||| ||| Sbjct 59656 TTCCAGGTTGTCAACCCCTGGCTGCTTAAGGATCTCGTCGACATGGGCTTATGGT--CCG 59713 Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGA 55715 | || |||| || || |||| ||| || ||||| ||||| | | | Sbjct 59714 ATGCCATGAAGAACCGTATCATTGCCGAGAATGGT---TCCGTTCAGAACATCCCCAACA 59770 Query 55716 TTCCT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774 |||| | | | |||||| | ||| ||| || ||||| || | ||| | | Sbjct 59771 TTCCCGCCGAGG-TCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGCACCGTT 59829 Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 | | ||| ||| ||||||||||| | |||||||||||||||||| || |||||| | Sbjct 59830 GTCCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTCAACATCCAC 59889 Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894 ||| || | || || ||| |||| | | | ||||| || || |||||| || Sbjct 59890 ATGAAGGACCCGACAATGGGCAAGATCACCAGCATGCATTTCGCTGGCTGGAAGCTTGGT 59949 Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||||||||| |||||||| ||||| || Sbjct 59950 CTCAAGACGGGCATGTACTACCTGCGTAC 59978 >seq1521 Length=15129 Score = 105 bits (116), Expect = 7e-18 Identities = 183/264 (69%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| ||| |||||||| ||||| ||||| || | |||||| | ||| Sbjct 12319 AATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTCGAGAACCGAAGTTTCCGGA 12260 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 ||||||| | ||| | |||||| | ||||||||| | || || | | || || Sbjct 12259 GGGCTCCAGGCAGTTGATGTTGTTTGAACCCACAAAGGTCTGCGCTAGACCAATGATGGT 12200 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 || || | | ||||||||||| || | ||||||||| | | ||| || |||| Sbjct 12199 CTGCTGAAGAGACACTTCACCATGGTGGTAGGACGTCTGCTCAGAAATGTAACCGGCCAA 12140 Query 117490 CTGAGCCACC--TTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547 | | | ||| || || | |||| || |||| |||||| ||||| || || || || Sbjct 12139 TTCAACGACCTTTTGATCTTTGAC--CAAGTTCCTCTTGAAACAGGCGTACATGACTTTA 12082 Query 117548 CGCTGACTTGGCTTCAGACCATCC 117571 || |||| ||||||| |||||| Sbjct 12081 CGTTGACCAGGCTTCAATCCATCC 12058 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/117 (78%), Gaps = 6/117 (5%) Strand=Plus/Minus Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCG---GTCACGCGCTG 119130 |||||| ||||| |||||||||||||| ||||| ||||||||| ||| || Sbjct 10432 ACTGAAGACGTTACAAAGCTTGGCACCGTAACCGTTGCGACCACCGACTGTC---TTCTT 10376 Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||| ||||||| ||||||||| | ||||| ||||| |||||||| | |||||| || Sbjct 10375 CTCGTCGTCGTCGTAGTTGGAACCAGTCAAGAGGTGACCAAAGATCATCTCGGGAAT 10319 >seq1058 Length=49244 Score = 100 bits (110), Expect = 3e-16 Identities = 294/445 (66%), Gaps = 16/445 (4%) Strand=Plus/Plus Query 74472 ACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAA 74531 || ||||| ||||| ||||||||||| || | | |||||||||||||| |||| || Sbjct 16090 ACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCAAAG 16149 Query 74532 GGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGGCGATCCGCC 74588 ||||| | ||| | ||| || |||| ||| ||| || || || Sbjct 16150 GGGTTGGAAGACTTGTAGAC---CTTGTCGTTGCCAAGAGCAACCAAGAGACGGTCGGCA 16206 Query 74589 ACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGT 74648 || || | ||||||||| |||| | | |||||||| ||| ||| ||||| Sbjct 16207 ACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGCAAGGCAGA 16266 Query 74649 GCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGTGAATGTCT 74708 |||||||| | ||||| ||| | || | || || ||| | | |||| | Sbjct 16267 GCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAATGTCCTCAATGACC 16326 Query 74709 T---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACGGCAAACTCCTGATG 74764 | || ||||| | | | ||||||||||| ||| | || |||||| || || Sbjct 16327 TGCTTGCTAGGGCGGTGCT---TGAGGTGAGAGTACAAGAGGCA-GGCAAAGTCGGTGTG 16382 Query 74765 CGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCAC 74823 ||| || ||||| | | || | || || || || | || || ||||| || |||| Sbjct 16383 -GAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCAC 16441 Query 74824 GCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACG 74883 ||||||| | ||| ||||||| ||||| ||| ||||||||||| || |||||| | Sbjct 16442 GCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACAGCGG 16501 Query 74884 CAAAGGCGACAAGGCGTTGCGCGAA 74908 | ||||| || || || || ||||| Sbjct 16502 CGAAGGCAACCAGCCGCTGGGCGAA 16526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547197011604800