Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 259 5e-64
seq1521 105 7e-18
seq1058 100 3e-16
>seq1932
Length=74184
Score = 259 bits (286), Expect = 5e-64
Identities = 519/761 (68%), Gaps = 20/761 (3%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| ||||| | || ||| |||||||| ||| ||| |||||| |||
Sbjct 58265 TCATGCGTGTCGCAGTCGGCATCTGGGGTGACGATGTTGAGCGCGTCATTGAGACCTACA 58324
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | |||| ||| || |||||| | || || || |||||||| |||||
Sbjct 58325 ACCTCATGTCCAGCAAGTTCTTCACCCACGCCTCCCCCACACTCTTCAACGCCGGTACCC 58384
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
||| ||| |||| |||||||| || | |||||||| ||||| || || || |
Sbjct 58385 CTCAGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCCATTGAGGGTA 58444
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| || |||||| || ||| ||||||||| | | ||||| || ||| ||
Sbjct 58445 TCTACGACACCCTCAAGACCTGCGCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCA 58504
Query 53433 ACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| || | | ||| |||||| | ||| | || || || |||||| | | |
Sbjct 58505 AC-GCCC-ACCGTATCCGTGCCACTGGCTCCTATATTGCCGGCACCAACGGCACCTCTAA 58562
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| || | || ||||| || |||||||||||||| || || |||||| ||||||||||
Sbjct 58563 CGGTGTCATTCCCATGCTTCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGG 58622
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | |||||||||||||| ||||| ||||||||||| | | ||
Sbjct 58623 CAACAAGCGTCCTGGTGCCTTCGCCATCTACCTTGAGCCTTGGCACGCCGATGTCTTTGA 58682
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669
||| | || |||| ||| || || | || ||| | || ||| |||||||| ||
Sbjct 58683 GTTCATGGACTTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGCTCGTGACCTTTTCC 58741
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729
|| || ||||| || || || |||||| | | || |||||| ||| || ||| ||
Sbjct 58742 TCGCCCTCTGGATCCCCGATCTGTTCATGAAGAGAGTCGAGAAGAACGCCGAATGGACCC 58801
Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788
| ||||| || ||||||||||||||||| | | || |||||| |||||||| | |
Sbjct 58802 TCATGTGTCCCAACGAGTGCCCCGGCCTGGCTGACTG-CTACGGCGAGGAGTTCGAGGCC 58860
Query 53789 ATGTATCGGACGTA------CGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGT 53842
|||| || ||| || || |||| ||| |||| ||||||| |
Sbjct 58861 TTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGC------AAGACCATCAAGGCCCAG 58914
Query 53843 GAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTAC 53902
|| | ||| | || |||||| || ||| ||||| || | || | |||| |||
Sbjct 58915 AAGCTTTGGTACGCCATCCTCGAGGCTCAGACTGAGACCGGCAACCCCTTCATGCTTTAC 58974
Query 53903 AAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
||||| | | ||| |||||||||||||||||| ||||
Sbjct 58975 AAGGACGCCGCGAACCGCAAGAGCAACCAGAAGAACCTCGG 59015
Score = 102 bits (112), Expect = 9e-17
Identities = 297/449 (66%), Gaps = 15/449 (3%)
Strand=Plus/Plus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||| ||||| || || || ||||| || || || || | |||||| ||||||||
Sbjct 59536 CGCAACAGTCTGCTTGTTGCTCCCATGCCTACTGCCTCCACTTCCCAGATCTTGGGCAAC 59595
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| |||||||||||| |||||| || || || |||
Sbjct 59596 AACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGCCGTGTTCTTGCCGGCGAG 59655
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663
|| | ||||| || | ||||| || | || | ||| |||
Sbjct 59656 TTCCAGGTTGTCAACCCCTGGCTGCTTAAGGATCTCGTCGACATGGGCTTATGGT--CCG 59713
Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGA 55715
| || |||| || || |||| ||| || ||||| ||||| | | |
Sbjct 59714 ATGCCATGAAGAACCGTATCATTGCCGAGAATGGT---TCCGTTCAGAACATCCCCAACA 59770
Query 55716 TTCCT-CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTG 55774
|||| | | | |||||| | ||| ||| || ||||| || | ||| | |
Sbjct 59771 TTCCCGCCGAGG-TCAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCGCACCGTT 59829
Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834
| | ||| ||| ||||||||||| | |||||||||||||||||| || |||||| |
Sbjct 59830 GTCCAGATGGCTGCCGATCGTGGTGCCTTCATCGACCAGTCCCAGTCCCTCAACATCCAC 59889
Query 55835 ATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGA 55894
||| || | || || ||| |||| | | | ||||| || || |||||| ||
Sbjct 59890 ATGAAGGACCCGACAATGGGCAAGATCACCAGCATGCATTTCGCTGGCTGGAAGCTTGGT 59949
Query 55895 CTCAAGACGGGTATGTACTATCTGCGGAC 55923
||||||||||| |||||||| ||||| ||
Sbjct 59950 CTCAAGACGGGCATGTACTACCTGCGTAC 59978
>seq1521
Length=15129
Score = 105 bits (116), Expect = 7e-18
Identities = 183/264 (69%), Gaps = 4/264 (2%)
Strand=Plus/Minus
Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369
||||||||||| ||| |||||||| ||||| ||||| || | |||||| | |||
Sbjct 12319 AATGTAACGAGGGCTGGCAGCATCTGAACCACCGGCAAGTCGAGAACCGAAGTTTCCGGA 12260
Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429
||||||| | ||| | |||||| | ||||||||| | || || | | || ||
Sbjct 12259 GGGCTCCAGGCAGTTGATGTTGTTTGAACCCACAAAGGTCTGCGCTAGACCAATGATGGT 12200
Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489
|| || | | ||||||||||| || | ||||||||| | | ||| || ||||
Sbjct 12199 CTGCTGAAGAGACACTTCACCATGGTGGTAGGACGTCTGCTCAGAAATGTAACCGGCCAA 12140
Query 117490 CTGAGCCACC--TTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTG 117547
| | | ||| || || | |||| || |||| |||||| ||||| || || || ||
Sbjct 12139 TTCAACGACCTTTTGATCTTTGAC--CAAGTTCCTCTTGAAACAGGCGTACATGACTTTA 12082
Query 117548 CGCTGACTTGGCTTCAGACCATCC 117571
|| |||| ||||||| ||||||
Sbjct 12081 CGTTGACCAGGCTTCAATCCATCC 12058
Score = 91.5 bits (100), Expect = 2e-13
Identities = 91/117 (78%), Gaps = 6/117 (5%)
Strand=Plus/Minus
Query 119074 ACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCG---GTCACGCGCTG 119130
|||||| ||||| |||||||||||||| ||||| ||||||||| ||| ||
Sbjct 10432 ACTGAAGACGTTACAAAGCTTGGCACCGTAACCGTTGCGACCACCGACTGTC---TTCTT 10376
Query 119131 CTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187
||| ||||||| ||||||||| | ||||| ||||| |||||||| | |||||| ||
Sbjct 10375 CTCGTCGTCGTCGTAGTTGGAACCAGTCAAGAGGTGACCAAAGATCATCTCGGGAAT 10319
>seq1058
Length=49244
Score = 100 bits (110), Expect = 3e-16
Identities = 294/445 (66%), Gaps = 16/445 (4%)
Strand=Plus/Plus
Query 74472 ACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAA 74531
|| ||||| ||||| ||||||||||| || | | |||||||||||||| |||| ||
Sbjct 16090 ACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCAAAG 16149
Query 74532 GGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGGCGATCCGCC 74588
||||| | ||| | ||| || |||| ||| ||| || || ||
Sbjct 16150 GGGTTGGAAGACTTGTAGAC---CTTGTCGTTGCCAAGAGCAACCAAGAGACGGTCGGCA 16206
Query 74589 ACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGT 74648
|| || | ||||||||| |||| | | |||||||| ||| ||| |||||
Sbjct 16207 ACGAACTCGATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGCAAGGCAGA 16266
Query 74649 GCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTGTGAATGTCT 74708
|||||||| | ||||| ||| | || | || || ||| | | |||| |
Sbjct 16267 GCCTCGGTTAGGAACTCCTGCTCAATCTTGACGGCATCAACGATAATGTCCTCAATGACC 16326
Query 74709 T---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTA-AAGCGTCACGGCAAACTCCTGATG 74764
| || ||||| | | | ||||||||||| ||| | || |||||| || ||
Sbjct 16327 TGCTTGCTAGGGCGGTGCT---TGAGGTGAGAGTACAAGAGGCA-GGCAAAGTCGGTGTG 16382
Query 74765 CGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCAC 74823
||| || ||||| | | || | || || || || | || || ||||| || ||||
Sbjct 16383 -GAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCAC 16441
Query 74824 GCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACG 74883
||||||| | ||| ||||||| ||||| ||| ||||||||||| || |||||| |
Sbjct 16442 GCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACAGCGG 16501
Query 74884 CAAAGGCGACAAGGCGTTGCGCGAA 74908
| ||||| || || || || |||||
Sbjct 16502 CGAAGGCAACCAGCCGCTGGGCGAA 16526
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547197011604800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |