Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1932 325 4e-84 seq1741 188 8e-43 seq791 163 3e-35 seq1821 111 2e-19 >seq1932 Length=74184 Score = 325 bits (360), Expect = 4e-84 Identities = 1146/1768 (65%), Gaps = 69/1768 (4%) Strand=Plus/Minus Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090 |||| |||| ||||| |||||||||||||||||||| || ||||||||| | || Sbjct 59985 TGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATG 59926 Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150 ||| ||| ||| | | ||| |||| || |||| |||||| || ||||| ||||| Sbjct 59925 CATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTG 59866 Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210 |||||| || |||||||| || ||||| | | || | || | |||||||| Sbjct 59865 GTCGATGAAGGCACCACGATCGGCAGCCATCTGGACAACGGTGCGCTGGGAGATTTCCCA 59806 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || |||| |||| | ||| | ||||||| | | | | | | Sbjct 59805 GACGGTCTTGTACAGAGCCTTG---ACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGA 59749 Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||| | || |||| | || |||| || | ||| | || | | | || Sbjct 59748 ACCATTCTCGGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACGAG 59689 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 ||| || | || | | ||| || | || |||| || || || || ||| | Sbjct 59688 ATCCTTAAGCAGCCAGGGGTTGACAACCTGGA---ACTCGCCGGCAAGAACACGGCGCTG 59632 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | |||||| ||||| || ||||||||| || | |||||| | ||| Sbjct 59631 GTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGA 59572 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || | || | ||| || || | ||||| | |||||| | ||| Sbjct 59571 GGCAGTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTC 59512 Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553 || | || | ||| | ||| | ||| |||| ||||||||||| | Sbjct 59511 CTTCAGAGAGTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACATTCCACATGTCGTAC 59457 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||| |||| || || || ||| || |||| ||| | |||||| | || Sbjct 59456 TGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTG 59397 Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673 ||||| | | ||| | || || ||||| || ||| ||| || | |||||| Sbjct 59396 GCCAGTTGAACGGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTG 59337 Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733 | | |||| |||| || ||||| | || || | | ||| | ||||| || Sbjct 59336 AGATCGCGAGCCTCAGGAGACTCGAAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGA 59277 Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAAT 80792 ||||| || || | | |||| || ||||| ||| |||| | | || ||||| |||| Sbjct 59276 CCCTGGACACCAAGGCCGATGGGACGGTGACGCATGTT-GCTGTTGCGAGCCTCAGGAAC 59218 Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852 ||||| ||| ||| |||| |||||||||||| ||| ||| | || || || Sbjct 59217 GGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTC 59158 Query 80853 ATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906 ||||| ||||| || ||| | | ||| | || || | || ||| || Sbjct 59157 GTGAAGCTTCTGGAAATCGTAGACACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAG 59098 Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 || |||| ||||| || || ||||| |||| | |||| | ||| || ||||| Sbjct 59097 AGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCA 59038 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026 | ||| || || || || ||||| |||||||| |||| ||| ||||| Sbjct 59037 GAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTC 58978 Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086 |||||| |||| | ||| | |||||||| ||| | || ||||||||||| ||||| Sbjct 58977 CTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAG 58918 Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146 || | ||||||| |||||| ||||||||| | | ||||| |||| | Sbjct 58917 CTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGC 58858 Query 81147 GTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205 ||||||| | |||| | ||| ||| ||| | ||||||||||| || ||||| ||| Sbjct 58857 CTCGAACTCCTCGCCGTAGCAGT-CAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGG 58799 Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265 ||| |||| || ||||| || ||||||||| || ||||||||||||||| || Sbjct 58798 TCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGA 58739 Query 81266 ACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324 | ||||| || ||| || ||||||| | || ||||| |||||| || | || || Sbjct 58738 AAAGGTCACGAGCA-CGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCA 58680 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGG 81378 | || || || ||||| ||||| || || | ||||| | || | |||| | Sbjct 58679 AAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTG---TTG 58623 Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 |||||||||| |||||| || ||||| ||| || ||||| | ||| || |||| ||| Sbjct 58622 CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCG 58563 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTG 81496 | || ||||| || || | ||| || || |||| || || || ||| Sbjct 58562 TTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTG 58503 Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556 ||||| |||||||| | | ||| || ||| || || || | ||| || || | Sbjct 58502 --AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGA 58445 Query 81557 TTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCTG 81608 | ||||| ||| |||| |||||||| ||||| ||| ||||| || || ||| Sbjct 58444 TACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGC-TGGCA-CTG 58387 Query 81609 AGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGA 81668 |||| | ||||| ||||| ||||| |||| ||||| |||| | | | || Sbjct 58386 AGGG------GTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA 58333 Query 81669 CATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTAC 81728 ||| |||| ||||| || ||||||| || ||||||||| || |||| || || Sbjct 58332 CATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGAC 58273 Query 81729 ACGCATAAACATGTACTGGGGCGTCTCG 81756 |||||| | ||||| ||| || ||||| Sbjct 58272 ACGCATGATCATGTGCTGCGGTCTCTCG 58245 >seq1741 Length=26822 Score = 188 bits (208), Expect = 8e-43 Identities = 182/231 (79%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| ||||| |||||||| |||||| | ||||| |||||| Sbjct 16971 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATTACTTTGGAGGTCGAGTCATCA 17030 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| | || || ||||| |||||||| |||||||| |||||| Sbjct 17031 GACACGATTGACAACGTGAAGTCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCAG 17090 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||| ||||| || || |||| ||| ||||| ||| ||||| || Sbjct 17091 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGAGC-GACTACAA 17149 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||||||||| |||||||| || | |||||||| || || || Sbjct 17150 CATCCAGAAGGAATCCACCCTTCATCTCGTACTCCGTCTTCGTGGCGGTCA 17200 Score = 181 bits (200), Expect = 1e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || || |||||||| ||||| ||||| ||| | Sbjct 16755 GTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCGAC 16814 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||||||||||||||| ||||| || |||||||||||| | || Sbjct 16815 AATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATC 16874 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| |||||||| ||||||| || |||||| | ||||| || | || ||||| Sbjct 16875 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTATCCGACTACAACATTCAGAAGGAG 16934 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || | || | |||||||||||||| Sbjct 16935 TCCACGCTCCACTTGGTTCTCCGTCTTCGCGGTGG 16969 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||| ||||| ||||| ||||| ||| | || | ||| | Sbjct 16481 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACGTCAAGTCG 16540 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| || || || || ||||||||||| ||||| ||||| ||| Sbjct 16541 AAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 16600 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||| | || ||||| | ||||| || |||| ||||| || || || || Sbjct 16601 CAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 16660 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || || || ||||| Sbjct 16661 TTGGTTCTCCGCCTCCGTGGTGG 16683 >seq791 Length=44334 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || ||||||||||| || || ||||| ||||| Sbjct 42669 ATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCG 42610 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 42609 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGAC 42550 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 42549 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 42490 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || ||| |||| || || ||||| Sbjct 42489 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 42440 >seq1821 Length=135001 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| ||||| |||||||| ||||| || | || Sbjct 45792 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 45851 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| || || || ||||||||||| | Sbjct 45852 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 45911 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| || ||||| | || ||||| | ||||| || |||| ||| Sbjct 45912 ATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 45971 Query 27595 G 27595 | Sbjct 45972 G 45972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570290610229120