Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1932 325 4e-84
seq1741 188 8e-43
seq791 163 3e-35
seq1821 111 2e-19
>seq1932
Length=74184
Score = 325 bits (360), Expect = 4e-84
Identities = 1146/1768 (65%), Gaps = 69/1768 (4%)
Strand=Plus/Minus
Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090
|||| |||| ||||| |||||||||||||||||||| || ||||||||| | ||
Sbjct 59985 TGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAGCCAGCGAAATG 59926
Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTG 80150
||| ||| ||| | | ||| |||| || |||| |||||| || ||||| |||||
Sbjct 59925 CATGCTGGTGATCTTGCCCATTGTCGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTG 59866
Query 80151 ACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCA 80210
|||||| || |||||||| || ||||| | | || | || | ||||||||
Sbjct 59865 GTCGATGAAGGCACCACGATCGGCAGCCATCTGGACAACGGTGCGCTGGGAGATTTCCCA 59806
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || |||| |||| | ||| | ||||||| | | | | | |
Sbjct 59805 GACGGTCTTGTACAGAGCCTTG---ACCTCGGCGGGAATGTTGGGGATGTTCTGAACGGA 59749
Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||| | || |||| | || |||| || | ||| | || | | | ||
Sbjct 59748 ACCATTCTCGGCAATGATACGGTTCTTCATGGCATCGGACCATAAGCCCATGTCGACGAG 59689
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
||| || | || | | ||| || | || |||| || || || || ||| |
Sbjct 59688 ATCCTTAAGCAGCCAGGGGTTGACAACCTGGA---ACTCGCCGGCAAGAACACGGCGCTG 59632
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | |||||| ||||| || ||||||||| || | |||||| | |||
Sbjct 59631 GTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAAGATCTGGGAAGTGGA 59572
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| || | || | ||| || || | ||||| | |||||| | |||
Sbjct 59571 GGCAGTAGGCATGGGAGCAACAAGCAGACTGTTGCGAACACCGTGTTCCTTGATCTGCTC 59512
Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553
|| | || | ||| | ||| | ||| |||| ||||||||||| |
Sbjct 59511 CTTCAGAGAGTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACATTCCACATGTCGTAC 59457
Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613
|| | ||| |||| || || || ||| || |||| ||| | |||||| | ||
Sbjct 59456 TGAAGGATACCCTGGGAGATAGGGGAGCCCTCGTACGTGGAGTAGGTACCCTCCTCCCTG 59397
Query 80614 GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673
||||| | | ||| | || || ||||| || ||| ||| || | ||||||
Sbjct 59396 GCCAGTTGAACGGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAAATCTTCTTGTTG 59337
Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733
| | |||| |||| || ||||| | || || | | ||| | ||||| ||
Sbjct 59336 AGATCGCGAGCCTCAGGAGACTCGAAAGGCATGCGTAGGGCAAGGAAGGCATCAGCAAGA 59277
Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAAT 80792
||||| || || | | |||| || ||||| ||| |||| | | || ||||| ||||
Sbjct 59276 CCCTGGACACCAAGGCCGATGGGACGGTGACGCATGTT-GCTGTTGCGAGCCTCAGGAAC 59218
Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852
||||| ||| ||| |||| |||||||||||| ||| ||| | || || ||
Sbjct 59217 GGGGTAGTGGTTGACATCAATGATCTTGTTCAGGTTGCGGACAACGACCTGAGTGACCTC 59158
Query 80853 ATGAAGTTTCTGAAAGTCGAAT------TGGTTCCCCTTCACAAATGCCGGAAGGCTCAG 80906
||||| ||||| || ||| | | ||| | || || | || ||| ||
Sbjct 59157 GTGAAGCTTCTGGAAATCGTAGACACCCTCGTTGTAGTCAACGAAGGTAGGCAGGGCAAG 59098
Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966
|| |||| ||||| || || ||||| |||| | |||| | ||| || |||||
Sbjct 59097 AGAGGCCAAGTTGCATACAGCAACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCA 59038
Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTC 81026
| ||| || || || || ||||| |||||||| |||| ||| |||||
Sbjct 59037 GAGATTGGAGCTGCGGATGGTTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTC 58978
Query 81027 CTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAAT 81086
|||||| |||| | ||| | |||||||| ||| | || ||||||||||| |||||
Sbjct 58977 CTTGTAAAGCATGAAGGGGTTGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAG 58918
Query 81087 CTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTC 81146
|| | ||||||| |||||| ||||||||| | | ||||| |||| |
Sbjct 58917 CTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGC 58858
Query 81147 GTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGT 81205
||||||| | |||| | ||| ||| ||| | ||||||||||| || ||||| |||
Sbjct 58857 CTCGAACTCCTCGCCGTAGCAGT-CAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGG 58799
Query 81206 GCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGA 81265
||| |||| || ||||| || ||||||||| || ||||||||||||||| ||
Sbjct 58798 TCCATTCGGCGTTCTTCTCGACTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGA 58739
Query 81266 ACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324
| ||||| || ||| || ||||||| | || ||||| |||||| || | || ||
Sbjct 58738 AAAGGTCACGAGCA-CGGACCTCCTCCTTGCCGTGGTTCTTGCGCAAGTCCATGAACTCA 58680
Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGG 81378
| || || || ||||| ||||| || || | ||||| | || | |||| |
Sbjct 58679 AAGACATCGGCGTGCCAAGGCTCAAGGTAGATGGCGAAGGCACCAGGACGCTTG---TTG 58623
Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438
|||||||||| |||||| || ||||| ||| || ||||| | ||| || |||| |||
Sbjct 58622 CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGAAGCATGGGAATGACACCG 58563
Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGATTG 81496
| || ||||| || || | ||| || || |||| || || || |||
Sbjct 58562 TTAGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATACGGTGGGCGTTG 58503
Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556
||||| |||||||| | | ||| || ||| || || || | ||| || || |
Sbjct 58502 --AGACCAATGCCACCAGCCATCTTGGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGA 58445
Query 81557 TTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCTG 81608
| ||||| ||| |||| |||||||| ||||| ||| ||||| || || |||
Sbjct 58444 TACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCATGAAGACAGC-TGGCA-CTG 58387
Query 81609 AGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGA 81668
|||| | ||||| ||||| ||||| |||| ||||| |||| | | | ||
Sbjct 58386 AGGG------GTACCGGCGTTGAAGAGTGTGGGGGAGGCGTGGGTGAAGAACTTGCTGGA 58333
Query 81669 CATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTAC 81728
||| |||| ||||| || ||||||| || ||||||||| || |||| || ||
Sbjct 58332 CATGAGGTTGTAGGTCTCAATGACGCGCTCAACATCGTCACCCCAGATGCCGACTGCGAC 58273
Query 81729 ACGCATAAACATGTACTGGGGCGTCTCG 81756
|||||| | ||||| ||| || |||||
Sbjct 58272 ACGCATGATCATGTGCTGCGGTCTCTCG 58245
>seq1741
Length=26822
Score = 188 bits (208), Expect = 8e-43
Identities = 182/231 (79%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| ||||| |||||||| |||||| | ||||| ||||||
Sbjct 16971 ATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACAATTACTTTGGAGGTCGAGTCATCA 17030
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || ||||| | || || ||||| |||||||| |||||||| ||||||
Sbjct 17031 GACACGATTGACAACGTGAAGTCCAAGATCCAGGATAAGGAGGGTATTCCTCCCGACCAG 17090
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || ||||| ||||| || || |||| ||| ||||| ||| ||||| ||
Sbjct 17091 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAAGATGGTCGCACCCTGAGC-GACTACAA 17149
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||||||||| |||||||| || | |||||||| || || ||
Sbjct 17150 CATCCAGAAGGAATCCACCCTTCATCTCGTACTCCGTCTTCGTGGCGGTCA 17200
Score = 181 bits (200), Expect = 1e-40
Identities = 169/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || || |||||||| ||||| ||||| ||| |
Sbjct 16755 GTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCGAC 16814
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || ||||||||||||||||| ||||| || |||||||||||| | ||
Sbjct 16815 AATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATC 16874
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| |||||||| ||||||| || |||||| | ||||| || | || |||||
Sbjct 16875 TTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTATCCGACTACAACATTCAGAAGGAG 16934
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| || || | || | ||||||||||||||
Sbjct 16935 TCCACGCTCCACTTGGTTCTCCGTCTTCGCGGTGG 16969
Score = 141 bits (156), Expect = 1e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || ||||| ||||| ||||| ||||| ||| | || | ||| |
Sbjct 16481 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACGTCAAGTCG 16540
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||| || || || || ||||||||||| ||||| ||||| |||
Sbjct 16541 AAGATTCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGCAAG 16600
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||| ||||| | || ||||| | ||||| || |||| ||||| || || || ||
Sbjct 16601 CAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACCCTCCAC 16660
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | || || || |||||
Sbjct 16661 TTGGTTCTCCGCCTCCGTGGTGG 16683
>seq791
Length=44334
Score = 163 bits (180), Expect = 3e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| || || ||||||||||| || || ||||| |||||
Sbjct 42669 ATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCG 42610
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || |||||||||||||| || || || |||
Sbjct 42609 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGAC 42550
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| || || || || || ||||| |||||||| | || ||||| | |||||
Sbjct 42549 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 42490
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| ||||| || || || ||| |||| || || |||||
Sbjct 42489 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 42440
>seq1821
Length=135001
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || || ||||| ||||| |||||||| ||||| || | ||
Sbjct 45792 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 45851
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| || || || ||||||||||| |
Sbjct 45852 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 45911
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||| ||||| || ||||| | || ||||| | ||||| || |||| |||
Sbjct 45912 ATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 45971
Query 27595 G 27595
|
Sbjct 45972 G 45972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570290610229120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |