Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq609 96.9 3e-15 >seq609 Length=46141 Score = 96.9 bits (106), Expect = 3e-15 Identities = 208/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCC 34380 || || ||||||||||||| |||| || || || || || |||| ||| || || | Sbjct 44766 GGCGTCAAGATCTGGGACGGCAACGGATCGCGTGAGTTCCTCGACA-GCGTCGGCCTCTC 44824 Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 | || || | |||||| | ||||| |||||||| ||||| ||| | |||||||| || Sbjct 44825 ACACCGCGAAGTCGGCGACCTCGGCCCTGTCTACGGCTTCCAATGGCGTCACTTTGGCGC 44884 Query 34441 GGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499 ||||| || | | ||| |||| || | | ||| || ||||| ||| | | Sbjct 44885 CGAGTA-CGTCGACTCCAAGACGGATTACACAGCACAAGGCATTGACCAACTGGCCGAGG 44943 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559 | ||| ||| | ||| ||||||| | ||| | | ||| | | |||||||||||| Sbjct 44944 TAATCCACAAGCTCAAGACGAACCCTTACGACCGCCGAATCCTCCTCAGCGCGTGGAACC 45003 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTC 34618 | |||||| |||||| ||||| |||||||| | | ||| || ||||||||| Sbjct 45004 CAGCGGATCTGAAGAAGATGGCCCTCCCGCCGTGCCATA-TGTTTGCGCAGTTCTACGTC 45062 Query 34619 GCG 34621 || Sbjct 45063 TCG 45065 Score = 96.9 bits (106), Expect = 3e-15 Identities = 208/303 (69%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 6724 CGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCT 6782 || ||||||||| || ||| | | |||||||| ||||| |||||| |||||| Sbjct 45065 CGAGACGTAGAACTGCGCAAACA-TATGGCACGGCGGGAGGGCCATCTTCTTCAGATCCG 45007 Query 6783 TCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGA 6842 ||||||||||||| | | ||| | | ||| | ||||||| ||| | ||| || Sbjct 45006 CTGGGTTCCACGCGCTGAGGAGGATTCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGA 44947 Query 6843 TCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATAC 6901 | || | ||| ||||| || ||| | | || |||| ||| | | || ||| Sbjct 44946 TTACCTCGGCCAGTTGGTCAATGCCTTGTGCTGTGTAATCCGTCTTGGAGTCGACG-TAC 44888 Query 6902 TCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961 || || |||||||| | ||| ||||| |||||||| ||||| | |||||| | || || Sbjct 44887 TCGGCGCCAAAGTGACGCCATTGGAAGCCGTAGACAGGGCCGAGGTCGCCGACTTCGCGG 44828 Query 6962 GATGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 || || || ||| |||| || || || || || |||| ||||||||||||| || Sbjct 44827 TGTGAGAGGCCGACGC-TGTCGAGGAACTCACGCGATCCGTTGCCGTCCCAGATCTTGAC 44769 Query 7021 CCC 7023 || Sbjct 44768 GCC 44766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448246845294720