Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq609 96.9 3e-15
>seq609
Length=46141
Score = 96.9 bits (106), Expect = 3e-15
Identities = 208/303 (69%), Gaps = 6/303 (2%)
Strand=Plus/Plus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT-TCCC 34380
|| || ||||||||||||| |||| || || || || || |||| ||| || || |
Sbjct 44766 GGCGTCAAGATCTGGGACGGCAACGGATCGCGTGAGTTCCTCGACA-GCGTCGGCCTCTC 44824
Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440
| || || | |||||| | ||||| |||||||| ||||| ||| | |||||||| ||
Sbjct 44825 ACACCGCGAAGTCGGCGACCTCGGCCCTGTCTACGGCTTCCAATGGCGTCACTTTGGCGC 44884
Query 34441 GGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499
||||| || | | ||| |||| || | | ||| || ||||| ||| | |
Sbjct 44885 CGAGTA-CGTCGACTCCAAGACGGATTACACAGCACAAGGCATTGACCAACTGGCCGAGG 44943
Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559
| ||| ||| | ||| ||||||| | ||| | | ||| | | ||||||||||||
Sbjct 44944 TAATCCACAAGCTCAAGACGAACCCTTACGACCGCCGAATCCTCCTCAGCGCGTGGAACC 45003
Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGTC 34618
| |||||| |||||| ||||| |||||||| | | ||| || |||||||||
Sbjct 45004 CAGCGGATCTGAAGAAGATGGCCCTCCCGCCGTGCCATA-TGTTTGCGCAGTTCTACGTC 45062
Query 34619 GCG 34621
||
Sbjct 45063 TCG 45065
Score = 96.9 bits (106), Expect = 3e-15
Identities = 208/303 (69%), Gaps = 6/303 (2%)
Strand=Plus/Minus
Query 6724 CGCGACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCT 6782
|| ||||||||| || ||| | | |||||||| ||||| |||||| ||||||
Sbjct 45065 CGAGACGTAGAACTGCGCAAACA-TATGGCACGGCGGGAGGGCCATCTTCTTCAGATCCG 45007
Query 6783 TCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGA 6842
||||||||||||| | | ||| | | ||| | ||||||| ||| | ||| ||
Sbjct 45006 CTGGGTTCCACGCGCTGAGGAGGATTCGGCGGTCGTAAGGGTTCGTCTTGAGCTTGTGGA 44947
Query 6843 TCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATAC 6901
| || | ||| ||||| || ||| | | || |||| ||| | | || |||
Sbjct 44946 TTACCTCGGCCAGTTGGTCAATGCCTTGTGCTGTGTAATCCGTCTTGGAGTCGACG-TAC 44888
Query 6902 TCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961
|| || |||||||| | ||| ||||| |||||||| ||||| | |||||| | || ||
Sbjct 44887 TCGGCGCCAAAGTGACGCCATTGGAAGCCGTAGACAGGGCCGAGGTCGCCGACTTCGCGG 44828
Query 6962 GATGGGA-ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020
|| || || ||| |||| || || || || || |||| ||||||||||||| ||
Sbjct 44827 TGTGAGAGGCCGACGC-TGTCGAGGAACTCACGCGATCCGTTGCCGTCCCAGATCTTGAC 44769
Query 7021 CCC 7023
||
Sbjct 44768 GCC 44766
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448246845294720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |