Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1741 161 2e-34
seq791 161 2e-34
seq1821 120 7e-22
seq1932 95.1 3e-14
seq1556 84.2 5e-11
>seq1741
Length=26822
Score = 161 bits (178), Expect = 2e-34
Identities = 169/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || || ||||| ||||| || || |||||||| || || |||||
Sbjct 17192 ACGAAGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGT 17133
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||||||||||||||| || ||||||||||| || || ||||| ||||||| ||
Sbjct 17132 GCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACC 17073
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||||||||| |||||||| || || ||||| || || ||||| |
Sbjct 17072 CTCCTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAA 17013
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || ||||| || || |||||||| || || | ||||||
Sbjct 17012 AGTAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 16971
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || | ||| || |||||||| || || ||||| || || | |||||
Sbjct 16963 CGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTG 16904
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || || |||||||| || ||||| | || || |||||||| |||| ||
Sbjct 16903 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCC 16844
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||| ||||| || || || |||||||| ||||| || ||||| ||
Sbjct 16843 TCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGG 16784
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||| ||||| || ||||| ||||| ||
Sbjct 16783 GTGATGGTCTTGCCAGTGAGGGTCTTGAC 16755
Score = 127 bits (140), Expect = 5e-24
Identities = 142/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || ||||| || |||||||| || || | ||||| | || ||
Sbjct 16668 AGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 16609
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| ||||| || || || || || || || || | || |||||||||
Sbjct 16608 TCAAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCC 16549
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| |||||||| |||||| || |||||||||||||| |||
Sbjct 16548 TGAATCTTCGACTTGACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTC 16489
Query 211083 TTTCCCGTGA 211092
|| || ||||
Sbjct 16488 TTGCCGGTGA 16479
>seq791
Length=44334
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || | ||||| | || ||
Sbjct 42455 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 42514
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| ||||| || ||||| || || | || |||||||||
Sbjct 42515 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 42574
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || |||||||| ||||| |||
Sbjct 42575 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTC 42634
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| || || | ||||||
Sbjct 42635 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666
>seq1821
Length=135001
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | || || || ||||||||||| ||||||||
Sbjct 45970 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 45911
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||| || ||||| || || | || ||||||||||||||||| || || || |||
Sbjct 45910 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45851
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || ||||| || || || ||||| ||||| || ||||| || ||
Sbjct 45850 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 45792
>seq1932
Length=74184
Score = 95.1 bits (104), Expect = 3e-14
Identities = 190/282 (67%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145
|||| | |||||| ||||||||||| | | ||| || ||||| ||||||||
Sbjct 59017 TTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGT 58958
Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205
| || ||||| |||||| |||| ||| | |||||||| |||||| || ||||
Sbjct 58957 TGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTTGATGGTCT 58898
Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265
| | || ||||| ||||||||| | ||| | ||||||| ||| || |||
Sbjct 58897 TGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGC 58838
Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCA 178325
||| | || ||||| ||| ||||| || | ||| |||| | ||| | || |
Sbjct 58837 AGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCATTCGGCGTTCTTCTCGA 58778
Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
||| |||||||| || || | | |||||| ||| |||||
Sbjct 58777 CTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAA 58736
>seq1556
Length=96830
Score = 84.2 bits (92), Expect = 5e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866
||||| ||||||||||| | || || ||||| ||||||||||||| | ||||| ||
Sbjct 19131 CTTCCCAAGAAGCACGGCCGTGGTGGTCAATCCGCTCTGCGTTTTGCTCGTCTTCGTGAG 19190
Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926
|| ||| | ||||||||| | | || ||||| ||| || | ||| || ||||
Sbjct 19191 GAGAAGCGTCACAACTACGTCCGCAAGGTTGCCGAGTTGGCCGTCCAGAACTTCATCACC 19250
Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGAC 139982
|| ||||| || ||||| | || |||| ||||| || || ||||||||
Sbjct 19251 AACGACAAGCCCAACGTCGCTGGTCTGATTCTGGCTGGTTCTGCCGATTTCAAGAC 19306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159110771861240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |