Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1741 161 2e-34 seq791 161 2e-34 seq1821 120 7e-22 seq1932 95.1 3e-14 seq1556 84.2 5e-11 >seq1741 Length=26822 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || ||||| ||||| || || |||||||| || || ||||| Sbjct 17192 ACGAAGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGT 17133 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||||||||| || ||||||||||| || || ||||| ||||||| || Sbjct 17132 GCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACC 17073 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||||||||| |||||||| || || ||||| || || ||||| | Sbjct 17072 CTCCTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAA 17013 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || || |||||||| || || | |||||| Sbjct 17012 AGTAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 16971 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| || |||||||| || || ||||| || || | ||||| Sbjct 16963 CGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGATAGGGTG 16904 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || || |||||||| || ||||| | || || |||||||| |||| || Sbjct 16903 CGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCC 16844 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || |||||||| ||||| || ||||| || Sbjct 16843 TCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGG 16784 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| ||||| || ||||| ||||| || Sbjct 16783 GTGATGGTCTTGCCAGTGAGGGTCTTGAC 16755 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||||| | || || Sbjct 16668 AGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 16609 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || || || || || || || || | || ||||||||| Sbjct 16608 TCAAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCC 16549 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| |||||||| |||||| || |||||||||||||| ||| Sbjct 16548 TGAATCTTCGACTTGACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTC 16489 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 16488 TTGCCGGTGA 16479 >seq791 Length=44334 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 42455 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 42514 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 42515 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 42574 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || |||||||| ||||| ||| Sbjct 42575 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTC 42634 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 42635 TTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666 >seq1821 Length=135001 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | || || || ||||||||||| |||||||| Sbjct 45970 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 45911 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || ||||| || || | || ||||||||||||||||| || || || ||| Sbjct 45910 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45851 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || || || ||||| ||||| || ||||| || || Sbjct 45850 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 45792 >seq1932 Length=74184 Score = 95.1 bits (104), Expect = 3e-14 Identities = 190/282 (67%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145 |||| | |||||| ||||||||||| | | ||| || ||||| |||||||| Sbjct 59017 TTCCGAGGTTCTTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGT 58958 Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205 | || ||||| |||||| |||| ||| | |||||||| |||||| || |||| Sbjct 58957 TGCCGGTCTCAGTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTTGATGGTCT 58898 Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265 | | || ||||| ||||||||| | ||| | ||||||| ||| || ||| Sbjct 58897 TGCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGC 58838 Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCA 178325 ||| | || ||||| ||| ||||| || | ||| |||| | ||| | || | Sbjct 58837 AGTCAGCCAGGCCGGGGCACTCGTTGGGACACATGAGGGTCCATTCGGCGTTCTTCTCGA 58778 Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 ||| |||||||| || || | | |||||| ||| ||||| Sbjct 58777 CTCTCTTCATGAACAGATCGGGGATCCAGAGGGCGAGGAAAA 58736 >seq1556 Length=96830 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||| ||||||||||| | || || ||||| ||||||||||||| | ||||| || Sbjct 19131 CTTCCCAAGAAGCACGGCCGTGGTGGTCAATCCGCTCTGCGTTTTGCTCGTCTTCGTGAG 19190 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 || ||| | ||||||||| | | || ||||| ||| || | ||| || |||| Sbjct 19191 GAGAAGCGTCACAACTACGTCCGCAAGGTTGCCGAGTTGGCCGTCCAGAACTTCATCACC 19250 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGAC 139982 || ||||| || ||||| | || |||| ||||| || || |||||||| Sbjct 19251 AACGACAAGCCCAACGTCGCTGGTCTGATTCTGGCTGGTTCTGCCGATTTCAAGAC 19306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159110771861240