Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq791 152 1e-31 seq1741 149 1e-30 seq1821 102 2e-16 seq1932 86.0 1e-11 >seq791 Length=44334 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| ||||| || || |||| ||||| |||| | || Sbjct 42445 ACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 42504 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || |||||||| || ||||| Sbjct 42505 GCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACC 42564 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 42565 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAG 42624 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||| || || | ||| | ||||| Sbjct 42625 GGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666 >seq1741 Length=26822 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || || |||||||| || |||| ||||| ||| || || Sbjct 17192 ACGAAGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGT 17133 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| Sbjct 17132 GCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACC 17073 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| |||||| || || |||||||| | || || || || Sbjct 17072 CTCCTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAA 17013 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| || | ||| | ||||| Sbjct 17012 AGTAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 16971 >seq1821 Length=135001 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | || || || |||||||| ||||||||||| Sbjct 45970 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 45911 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || |||||||| || || || |||||||| |||||||| ||| ||| ||| Sbjct 45910 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45851 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | || || ||||| ||||||| || || | ||| Sbjct 45850 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 45792 >seq1932 Length=74184 Score = 86.0 bits (94), Expect = 1e-11 Identities = 182/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 ||||||||| |||| || |||||| ||||| | |||||||| |||| ||| Sbjct 59006 TTCTGGTTGCTCTTGCGGTTCGCGGCGTCCTTGTAAAGCATGAAGGGGTTGCCGGTCTCA 58947 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | ||||| |||| ||| | |||||| | || || || | ||| | | |||| Sbjct 58946 GTCTGAGCCTCGAGGATGGCGTACCAAAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTG 58887 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 ||||| | ||||||||| ||||||| |||| || || | |||||| || | || Sbjct 58886 CCTTCGCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGG 58827 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 ||||| || || || || | ||| |||| || | | | || || ||||||||| Sbjct 58826 CCGGGGCACTCGTTGGGACACATGAGGGTCCATTCGGCGTTCTTCTCGACTCTCTTCATG 58767 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 || || || | |||| | |||| |||||| Sbjct 58766 AACAGATCGGGGATCCAGAGGGCGAGGAAAAG 58735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192488784646544