Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq609 118 9e-22
>seq609
Length=46141
Score = 118 bits (130), Expect = 9e-22
Identities = 164/227 (72%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 29589 CCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCA 29648
|||| |||| ||| ||| ||| ||| ||| ||||| | ||| ||||| | | | |
Sbjct 45363 CCCTGTTGTTGATCTCCAGCAAGGGGAAGTCTCTCGGCTCGCGCTCCAGCTGCACCTTGA 45304
Query 29649 GCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTG-GACAAACTCTCCC 29707
||| ||||||||||| | || ||||| || || |||| | ||| | | || ||||
Sbjct 45303 GCGCGTCCACGTGGTCCACATACACGTGCGCGTCGCCCATGACGTGCGTGAGGCT-TCCC 45245
Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767
|| | || || | | || ||||||| ||| ||||| | ||||||||| |||||
Sbjct 45244 GGCACCAGATCGCACGCCCGCGCAATCATGTGCGTCAGGAGCGCGTAGCTGGCAATGTTG 45185
Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCA 29814
|||||||| ||||| |||||||| | |||| |||||| ||||||||
Sbjct 45184 AAGGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTACAGCTGGCA 45138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406149458483536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |