Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02- 17] 2,776 sequences; 48,373,413 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq791 120 7e-22 seq1741 116 9e-21 >seq791 Length=44334 Score = 120 bits (132), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | || || Sbjct 42455 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 42514 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || | ||||||||| | | ||| || ||||| | Sbjct 42515 TCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGT 42572 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || |||||| | || | | |||| || ||| || || || || |||| Sbjct 42573 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAG 42632 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| || ||||| ||||||| |||||| Sbjct 42633 TCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666 >seq1741 Length=26822 Score = 116 bits (128), Expect = 9e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || |||||||| || || || || ||||||||||| ||| | || | ||||| Sbjct 17183 GAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATC 17124 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| || ||||| || ||||||||||| | ||||||||| | | || || ||||| Sbjct 17123 TTCCAGCTGCTTT--CCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTA 17066 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || || || | || | ||||||| ||| || || | |||||| Sbjct 17065 TCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATT 17006 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || |||||||||||||||| |||||| Sbjct 17005 GTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 16971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153779761478696