Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq791 120 7e-22
seq1741 116 9e-21
>seq791
Length=44334
Score = 120 bits (132), Expect = 7e-22
Identities = 156/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||||| || ||||||||||| |||| | || | || ||
Sbjct 42455 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 42514
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||||||||| || | ||||||||| | | ||| || ||||| |
Sbjct 42515 TCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGT 42572
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || |||||| | || | | |||| || ||| || || || || ||||
Sbjct 42573 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAG 42632
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| |||||||| || ||||| ||||||| ||||||
Sbjct 42633 TCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666
>seq1741
Length=26822
Score = 116 bits (128), Expect = 9e-21
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || |||||||| || || || || ||||||||||| ||| | || | |||||
Sbjct 17183 GAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATC 17124
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
||| || ||||| || ||||||||||| | ||||||||| | | || || |||||
Sbjct 17123 TTCCAGCTGCTTT--CCAGCGAAGATAAGACGCTGCTGGTCGGGAGGAATACCCTCCTTA 17066
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|| || || || || || | || | ||||||| ||| || || | ||||||
Sbjct 17065 TCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAAGTAATT 17006
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || |||||||||||||||| ||||||
Sbjct 17005 GTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 16971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153779761478696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |