Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20salicis_20[genbank_20GCA_5F001563125.1_202016-02-
17] 2,776 sequences; 48,373,413 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq791 178 3e-39
seq1741 154 3e-32
seq1821 134 3e-26
>seq791
Length=44334
Score = 178 bits (196), Expect = 3e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || ||||| || | ||| || || |||||||||||||| |
Sbjct 42439 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 42498
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || ||||| ||||||| || || ||||| ||
Sbjct 42499 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 42558
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || || | ||||| ||||| || | || ||
Sbjct 42559 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 42618
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| ||||||| ||||| ||||| ||||||||
Sbjct 42619 CTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 42666
>seq1741
Length=26822
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || |||| || | |||| || || || ||||||||||| |
Sbjct 16970 ACCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGA 16911
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| ||||| || || |||||||||||||| || |||||| ||
Sbjct 16910 TAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGG 16851
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || || | ||||| || || |||| |||||
Sbjct 16850 AATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCAGAAGACTCGAC 16791
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089
|| || ||||| ||||| || || | ||||| ||||
Sbjct 16790 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 16753
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || ||||| ||||| | ||| ||| || ||||||||||||||
Sbjct 17198 ACCGCCACGAAGACGGAGTACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCT 17139
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| ||||| || || || || || || ||||| | ||| || ||||| ||
Sbjct 17138 CAGGGTGCGACCATCTTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGG 17079
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||| || |||||||| | || ||| | || || ||||| || | |||||
Sbjct 17078 AATACCCTCCTTATCCTGGATCTTGGACTTCACGTTGTCAATCGTGTCTGATGACTCGAC 17019
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||| || ||||| || || | |||||| ||||| ||||||||
Sbjct 17018 CTCCAAAGTAATTGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 16971
Score = 125 bits (138), Expect = 1e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | || || || |||||||||||||| |
Sbjct 16684 ACCACCACGGAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 16625
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| ||||| || || || || || | ||| || || || ||
Sbjct 16624 GAGGGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGG 16565
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||| | || ||| | ||||| || || || | |||||
Sbjct 16564 GATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGAGGACTCGAC 16505
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
||||||||||| ||||| || ||
Sbjct 16504 CTCGAGAGTGATGGTCTTGCCGGT 16481
>seq1821
Length=135001
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | || |||||||| ||||| || || || || || ||||||
Sbjct 45970 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 45911
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
|| || || ||||| || || ||||||||||| |||||||| | || || | |||
Sbjct 45910 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 45851
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| ||||| || | ||||| || || || || ||||||||||||| ||||| |||||
Sbjct 45850 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 45792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046701970103504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |