Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq686 147 5e-30 >seq686 Length=266282 Score = 147 bits (162), Expect = 5e-30 Identities = 326/473 (69%), Gaps = 16/473 (3%) Strand=Plus/Minus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG-GGAG 230228 || || ||| ||||||| || |||| | |||||| ||||| || | ||| | || | Sbjct 148934 TCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTAT-CT-TCTTCAGCGGTG 148877 Query 230229 TTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287 || ||| ||||||||||||| ||| ||| | |||||||| || | || | Sbjct 148876 CTTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCA 148817 Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCA 230346 ||||| ||||| || ||||||||||| || || | | || | | || |||| || Sbjct 148816 ACGAGCTCATCTCCCGTGACGAGGGTCTTCA-CACCGACTTTGCCTGCCTCTTGTACTCT 148758 Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTT 230403 | ||| || || | ||| | || ||||| | | ||||| || || || Sbjct 148757 CACCTCAAGCACCGCC--CCAA-CAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTC 148701 Query 230404 GAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGC 230462 | | || |||||||| | ||| ||| | || || ||| ||| | ||||||||| | Sbjct 148700 AAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTG-CGCTCTTCTCGGCATGAACTC 148642 Query 230463 TGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTT 230521 ||||| ||| |||||||| || ||||| ||||||||| | | || || ||||| Sbjct 148641 C-AACTTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCA 148583 Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 |||| || || ||||| ||| |||||||| | || |||||| ||| || ||| | Sbjct 148582 ACGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCG 148523 Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634 | |||||||||||||| || ||||||||| |||||| |||| | |||||||| Sbjct 148522 GCAAGACCAACTTCTTTGAGAAGCGTGTCGCTGACTACCAGAAGGCTGGTGTG 148470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057811408919270