Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq686 147 5e-30
>seq686
Length=266282
Score = 147 bits (162), Expect = 5e-30
Identities = 326/473 (69%), Gaps = 16/473 (3%)
Strand=Plus/Minus
Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCG-GGAG 230228
|| || ||| ||||||| || |||| | |||||| ||||| || | ||| | || |
Sbjct 148934 TCCTTCGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTAT-CT-TCTTCAGCGGTG 148877
Query 230229 TTTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287
|| ||| ||||||||||||| ||| ||| | |||||||| || | || |
Sbjct 148876 CTTTTGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCA 148817
Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCA 230346
||||| ||||| || ||||||||||| || || | | || | | || |||| ||
Sbjct 148816 ACGAGCTCATCTCCCGTGACGAGGGTCTTCA-CACCGACTTTGCCTGCCTCTTGTACTCT 148758
Query 230347 AAGCTCCAGAACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTT 230403
| ||| || || | ||| | || ||||| | | ||||| || || ||
Sbjct 148757 CACCTCAAGCACCGCC--CCAA-CAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTC 148701
Query 230404 GAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGC 230462
| | || |||||||| | ||| ||| | || || ||| ||| | ||||||||| |
Sbjct 148700 AAGATTGAGCAGGAGTTCCTCACTGAGGCTCTGCCCTG-CGCTCTTCTCGGCATGAACTC 148642
Query 230463 TGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTT 230521
||||| ||| |||||||| || ||||| ||||||||| | | || || |||||
Sbjct 148641 C-AACTTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCA 148583
Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581
|||| || || ||||| ||| |||||||| | || |||||| ||| || ||| |
Sbjct 148582 ACGACAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCG 148523
Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634
| |||||||||||||| || ||||||||| |||||| |||| | ||||||||
Sbjct 148522 GCAAGACCAACTTCTTTGAGAAGCGTGTCGCTGACTACCAGAAGGCTGGTGTG 148470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057811408919270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |