Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq686 87.8 2e-12
>seq686
Length=266282
Score = 87.8 bits (96), Expect = 2e-12
Identities = 175/257 (68%), Gaps = 3/257 (1%)
Strand=Plus/Plus
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
|| ||||| |||||||| || ||||| || || |||||||| |||||||| | |
Sbjct 149124 TCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGGACC 149183
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|| || || || | || || || | |||||||| || ||||||||||| ||| ||
Sbjct 149184 TGGACCTCGCCGGAGAAGCGCTCGACGAGGTTCTCGTTGACGATACCGTCCGATGCGGCG 149243
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA--GATG-TAAGAATATGCCAA 16678
|| || || | ||||| ||||| || || || ||| | || | | | |||
Sbjct 149244 AAGAAGGCAAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCAG 149303
Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738
|| | | ||| ||||| | ||| | || || | ||||| ||| |||| | |||||
Sbjct 149304 TCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTC 149363
Query 16739 TTATACATTTTCCAAAT 16755
|| ||||||| ||| ||
Sbjct 149364 TTGTACATTTGCCAGAT 149380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511408461200280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |