Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq686 87.8 2e-12 >seq686 Length=266282 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/257 (68%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || ||||| |||||||| || ||||| || || |||||||| |||||||| | | Sbjct 149124 TCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGGACC 149183 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || || || | || || || | |||||||| || ||||||||||| ||| || Sbjct 149184 TGGACCTCGCCGGAGAAGCGCTCGACGAGGTTCTCGTTGACGATACCGTCCGATGCGGCG 149243 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA--GATG-TAAGAATATGCCAA 16678 || || || | ||||| ||||| || || || ||| | || | | | ||| Sbjct 149244 AAGAAGGCAAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCAG 149303 Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738 || | | ||| ||||| | ||| | || || | ||||| ||| |||| | ||||| Sbjct 149304 TCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTC 149363 Query 16739 TTATACATTTTCCAAAT 16755 || ||||||| ||| || Sbjct 149364 TTGTACATTTGCCAGAT 149380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511408461200280