Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq230 187 3e-42 >seq230 Length=716270 Score = 187 bits (206), Expect = 3e-42 Identities = 377/562 (67%), Gaps = 68/562 (12%) Strand=Plus/Minus Query 145661 GGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCC 145719 |||||| | || ||||| | ||| || | |||||||||| ||||||||||||||| Sbjct 622085 GGCTCCCGCTCCAGCTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCG 622026 Query 145720 CCCAGGACGTGGATGAAG-TCCCCGG-----GCTCG-AGGCCCGTGAGGTGGGCGACCAT 145772 |||| |||||| ||| | | ||||| | ||| | ||||| | | | ||| Sbjct 622025 CCCATGACGTGCGTGAGGCTTCCCGGTACCAGGTCGCACGCCCGCG-------CAATCAT 621973 Query 145773 GTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGA 145832 || ||||| || | ||||||||| |||||||||||||| || || |||||||| | || Sbjct 621972 GTGCGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGTCCCATGTCGCAGGA 621913 Query 145833 GCGCTGGTACAGCTGGCAGGAGAGCT--CCC----------------------------C 145862 |||||||||| |||||| ||| | ||| | Sbjct 621912 CCGCTGGTACAACTGGCAATGGAGGTGGCCCTTTGGCTTCTCCTCGTTTGCGGGCGTTGC 621853 Query 145863 GCC---------------CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGG 145906 ||| || ||||| ||||| ||| | | |||||| ||||| || | Sbjct 621852 GCCGCGGGCTCGCGGGTACGAGACGTAAAACTGCGCAAAC-ATGTGGCACGGCGGGAGCG 621794 Query 145907 CCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---G 145963 |||| ||||||||| |||||||||||| | |||| || | | || ||| | Sbjct 621793 CCATCTTCTTCAGGTCCGCTGGGTTCCAGGCGCTAAGGAGGA---TGCGGCGGTCGTAAG 621737 Query 145964 GGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAAT 146023 ||||| |||||| || || | || || ||||| |||||||| ||| ||||| Sbjct 621736 GGTTCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTGTAAT 621677 Query 146024 CTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCC 146083 | ||||||||||| |||||| |||| || ||||| | ||| ||||| ||||| ||||| | Sbjct 621676 CCGTCTTGGAGTCGACGTACTCGGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGAC 621617 Query 146084 CCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGT 146143 | ||||| ||| || | ||| || ||| | | | ||||||| || || || || | Sbjct 621616 CGAGGTCACCGACTTCGCGGTGGGAAAGACCGACGCTGTCGAGGAACTCGCGCGATCCAT 621557 Query 146144 TGGCGTCCCAGATCTTGACGCC 146165 || |||||||||||||||| || Sbjct 621556 TGCCGTCCCAGATCTTGACACC 621535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590069947733160