Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq230 187 3e-42
>seq230
Length=716270
Score = 187 bits (206), Expect = 3e-42
Identities = 377/562 (67%), Gaps = 68/562 (12%)
Strand=Plus/Minus
Query 145661 GGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCC 145719
|||||| | || ||||| | ||| || | |||||||||| |||||||||||||||
Sbjct 622085 GGCTCCCGCTCCAGCTGCACCTTGAGCGCGTCCACGTGGTCCGCGTAGACGTGCGCGTCG 622026
Query 145720 CCCAGGACGTGGATGAAG-TCCCCGG-----GCTCG-AGGCCCGTGAGGTGGGCGACCAT 145772
|||| |||||| ||| | | ||||| | ||| | ||||| | | | |||
Sbjct 622025 CCCATGACGTGCGTGAGGCTTCCCGGTACCAGGTCGCACGCCCGCG-------CAATCAT 621973
Query 145773 GTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGA 145832
|| ||||| || | ||||||||| |||||||||||||| || || |||||||| | ||
Sbjct 621972 GTGCGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGCACGCCGAGTCCCATGTCGCAGGA 621913
Query 145833 GCGCTGGTACAGCTGGCAGGAGAGCT--CCC----------------------------C 145862
|||||||||| |||||| ||| | ||| |
Sbjct 621912 CCGCTGGTACAACTGGCAATGGAGGTGGCCCTTTGGCTTCTCCTCGTTTGCGGGCGTTGC 621853
Query 145863 GCC---------------CGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGG 145906
||| || ||||| ||||| ||| | | |||||| ||||| || |
Sbjct 621852 GCCGCGGGCTCGCGGGTACGAGACGTAAAACTGCGCAAAC-ATGTGGCACGGCGGGAGCG 621794
Query 145907 CCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---G 145963
|||| ||||||||| |||||||||||| | |||| || | | || ||| |
Sbjct 621793 CCATCTTCTTCAGGTCCGCTGGGTTCCAGGCGCTAAGGAGGA---TGCGGCGGTCGTAAG 621737
Query 145964 GGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAAT 146023
||||| |||||| || || | || || ||||| |||||||| ||| |||||
Sbjct 621736 GGTTCGTCTTGAGCTTGTGGATGACCTCGGCCAGTTGGTCGACGCCCTGGCCCGTGTAAT 621677
Query 146024 CTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCC 146083
| ||||||||||| |||||| |||| || ||||| | ||| ||||| ||||| ||||| |
Sbjct 621676 CCGTCTTGGAGTCGACGTACTCGGCGCCAAAGTGGCGCCATTGGAAGCCGTACACGGGAC 621617
Query 146084 CCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGT 146143
| ||||| ||| || | ||| || ||| | | | ||||||| || || || || |
Sbjct 621616 CGAGGTCACCGACTTCGCGGTGGGAAAGACCGACGCTGTCGAGGAACTCGCGCGATCCAT 621557
Query 146144 TGGCGTCCCAGATCTTGACGCC 146165
|| |||||||||||||||| ||
Sbjct 621556 TGCCGTCCCAGATCTTGACACC 621535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590069947733160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |