Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq356 104 2e-17
>seq356
Length=254992
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | |||||||||||| |||||||| ||||| | |
Sbjct 84184 CCACCGCGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 84243
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| || || ||||| ||| | || | | ||||||||| |||
Sbjct 84244 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 84303
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| ||||| || ||||| || || | | ||| ||||||| | |||
Sbjct 84304 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACC 84363
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163
|| | ||| ||||||||||| || | ||| |||||
Sbjct 84364 TCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | || |||||||| |||||||| ||||| |
Sbjct 84470 CCACCACGAAGGCGGAGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 84529
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || ||||||| ||||| ||||| || |||| || | |||||| || |||
Sbjct 84530 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGG 84589
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| ||||| | ||| ||||| || |||
Sbjct 84590 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACC 84649
Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151
|| | || ||||||||||||||
Sbjct 84650 TCGAGAGTGATGGTCTTGCCGGT 84672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422254419102164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |