Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq686 183 3e-41
seq477 123 3e-23
seq356 123 3e-23
seq863 100 3e-16
>seq686
Length=266282
Score = 183 bits (202), Expect = 3e-41
Identities = 318/456 (70%), Gaps = 5/456 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040
||||||| || ||||| ||| |||||| || |||| || |||||| | ||||
Sbjct 148978 AGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGAT-GAGAACTCCTCCTTCGCCCAGCGT 148920
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
||||| ||||| || || || ||||| ||||||| || ||| ||| |||| |||
Sbjct 148919 CTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTT 148860
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||||||||| || || |||||||| || ||||| ||| |||||||||||||||| |
Sbjct 148859 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 148800
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
||||||||||| || |||||||||||| | ||| | || | ||| || ||
Sbjct 148799 GACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCACCGCCCC 148740
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
| | | | | | ||| ||| || || || ||| || |||||| ||||||
Sbjct 148739 AACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTC 148680
Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339
|| || || ||||| |||| ||| || || | || | | | |||| ||| |||||
Sbjct 148679 ACTGAGGCTCTGCC-CTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACAT 148621
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
|||||||| |||||| | || ||| ||| || | | || |||| |||||| | |
Sbjct 148620 TGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCTTC 148561
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434
|||||| | ||||| ||| | ||||| ||||||
Sbjct 148560 CAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 148525
Score = 183 bits (202), Expect = 3e-41
Identities = 214/286 (75%), Gaps = 5/286 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| ||||||| | || ||
Sbjct 149380 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 149321
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | | || |||| | ||| | ||||||
Sbjct 149320 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTC 149262
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || ||||| |||||||| ||||| |||||||||||||| || ||||||||
Sbjct 149261 TCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAACGAGAACCTCGTCGAGCG 149202
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| | ||||| ||||| ||||||| || |||||||||||||| |||||| ||
Sbjct 149201 CTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 149142
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | ||||| || | || || |||||||||||| |||
Sbjct 149141 GGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTAC 149096
>seq477
Length=261965
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || |||||| |
Sbjct 234391 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 234332
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| | |||||||| || ||
Sbjct 234331 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 234272
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | ||||||||| |||||||||||||||||||
Sbjct 234271 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 234212
Query 40879 G 40879
|
Sbjct 234211 G 234211
>seq356
Length=254992
Score = 123 bits (136), Expect = 3e-23
Identities = 138/182 (76%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| |||||||| |||| ||||| || |||| | | | | |||| | |||
Sbjct 84674 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATCGATAACG-TGAAG 84616
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| |||||||||||| | || ||||| || ||||| | ||| |||
Sbjct 84615 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGC 84556
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || |||| ||||||||| |||||||||||| ||||||||| | || ||
Sbjct 84555 AAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACCCTC 84496
Query 40891 CA 40892
||
Sbjct 84495 CA 84494
Score = 114 bits (126), Expect = 1e-20
Identities = 141/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || |||||||| ||||| ||||||||| |||| ||||| | | || | |
Sbjct 84400 TCGTCAAGACGCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCTGATACTATCG 84341
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || |||| || || |||||||||||| | |||||||| || | |
Sbjct 84340 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGA 84281
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| || ||||| || || || || | |||||||| |||||||||||| |||||||
Sbjct 84280 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGG 84221
Query 40880 AGGCCACGCTGCA 40892
|| |||| || ||
Sbjct 84220 AGTCCACTCTCCA 84208
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||||| || || || || || || | || ||||| | |
Sbjct 83954 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACGTTGGAAGTCGAGTCATCT 83895
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| | ||| || || | ||||| ||||| ||||| | |||||
Sbjct 83894 GACACGATTGATAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 83836
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || |||| ||| || || ||| |||| || | ||||| | | |||||||||
Sbjct 83835 GCAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACTTTGAGCGACTACAA 83776
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||| | || || ||||| ||
Sbjct 83775 TATCCAGAAGGAATCAACCCTCCATCTGGT 83746
>seq863
Length=517823
Score = 100 bits (110), Expect = 3e-16
Identities = 123/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || |||||||| || |||||| | || || || | ||
Sbjct 7259 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 7318
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 7319 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 7378
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 40857
|| || || |||| ||| || || ||||| || |||| |||||||||
Sbjct 7379 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTC 7426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515213217017040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |