Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq686 183 3e-41 seq477 123 3e-23 seq356 123 3e-23 seq863 100 3e-16 >seq686 Length=266282 Score = 183 bits (202), Expect = 3e-41 Identities = 318/456 (70%), Gaps = 5/456 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040 ||||||| || ||||| ||| |||||| || |||| || |||||| | |||| Sbjct 148978 AGAAGGCTGACTGGGCCCTGAAGTGGATCAGCGAT-GAGAACTCCTCCTTCGCCCAGCGT 148920 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 ||||| ||||| || || || ||||| ||||||| || ||| ||| |||| ||| Sbjct 148919 CTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCTTTTGCCTCCATCTTT 148860 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| || || |||||||| || ||||| ||| |||||||||||||||| | Sbjct 148859 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCCCGT 148800 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 ||||||||||| || |||||||||||| | ||| | || | ||| || || Sbjct 148799 GACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACTCTCACCTCAAGCACCGCCCC 148740 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 | | | | | | ||| ||| || || || ||| || |||||| |||||| Sbjct 148739 AACAAGCAGGTCATTGAGGACATCATCGTTGATGCCGTCAAGATTGAGCAGGAGTTCCTC 148680 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 || || || ||||| |||| ||| || || | || | | | |||| ||| ||||| Sbjct 148679 ACTGAGGCTCTGCC-CTGCGCTCTTCTCGGCATGAACTCCAACTTGATGAAGCAGTACAT 148621 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 |||||||| |||||| | || ||| ||| || | | || |||| |||||| | | Sbjct 148620 TGAGTTCGTTGCCGACCGCCTCCTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCTTC 148561 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434 |||||| | ||||| ||| | ||||| |||||| Sbjct 148560 CAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 148525 Score = 183 bits (202), Expect = 3e-41 Identities = 214/286 (75%), Gaps = 5/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||||| | || || Sbjct 149380 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 149321 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | || |||| | ||| | |||||| Sbjct 149320 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTC 149262 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| |||||||| ||||| |||||||||||||| || |||||||| Sbjct 149261 TCACATTCTTGCCTTCTTCGCCGCATCGGACGGTATCGTCAACGAGAACCTCGTCGAGCG 149202 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||||| ||||||| || |||||||||||||| |||||| || Sbjct 149201 CTTCTCCGGCGAGGTCCAGGTCCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 149142 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || || |||||||||||| ||| Sbjct 149141 GGAGAACATCCACTCTGAGACCTACTCCCTCCTCATCGACACCTAC 149096 >seq477 Length=261965 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || |||||| | Sbjct 234391 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 234332 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | |||||||| || || Sbjct 234331 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTG 234272 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| ||||||||||||||||||| Sbjct 234271 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 234212 Query 40879 G 40879 | Sbjct 234211 G 234211 >seq356 Length=254992 Score = 123 bits (136), Expect = 3e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| |||||||| |||| ||||| || |||| | | | | |||| | ||| Sbjct 84674 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGATACCATCGATAACG-TGAAG 84616 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| |||||||||||| | || ||||| || ||||| | ||| ||| Sbjct 84615 TCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGATCAGCAGCGTCTCATTTTCGCTGGC 84556 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| ||||||||| |||||||||||| ||||||||| | || || Sbjct 84555 AAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACCCTC 84496 Query 40891 CA 40892 || Sbjct 84495 CA 84494 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || |||||||| ||||| ||||||||| |||| ||||| | | || | | Sbjct 84400 TCGTCAAGACGCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCTTCTGATACTATCG 84341 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || |||| || || |||||||||||| | |||||||| || | | Sbjct 84340 ACAATGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCTGACCAGCAGCGTTTGA 84281 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| || ||||| || || || || | |||||||| |||||||||||| ||||||| Sbjct 84280 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGG 84221 Query 40880 AGGCCACGCTGCA 40892 || |||| || || Sbjct 84220 AGTCCACTCTCCA 84208 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || || || | || ||||| | | Sbjct 83954 ATGCAGATCTTCGTCAAGACGCTGACTGGAAAGACGATTACGTTGGAAGTCGAGTCATCT 83895 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | ||| || || | ||||| ||||| ||||| | ||||| Sbjct 83894 GACACGATTGATAACG-TGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 83836 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||| |||| || | ||||| | | ||||||||| Sbjct 83835 GCAGCGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACTTTGAGCGACTACAA 83776 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || ||||| || Sbjct 83775 TATCCAGAAGGAATCAACCCTCCATCTGGT 83746 >seq863 Length=517823 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || |||||| | || || || | || Sbjct 7259 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 7318 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 7319 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 7378 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 40857 || || || |||| ||| || || ||||| || |||| ||||||||| Sbjct 7379 CAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTC 7426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213217017040