Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq863 98.7 1e-15 seq356 95.1 1e-14 seq477 86.0 7e-12 >seq863 Length=517823 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43027 CGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCT 43086 |||| || |||||||| || ||||| || || ||||||||||||| || | || ||||| Sbjct 7415 CGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCCTCCT 7356 Query 43087 TGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||||| ||| || |||| | | | |||||| ||| ||||| || | |||| Sbjct 7355 TGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGA 7296 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| || ||||| || ||||| ||||| Sbjct 7295 TAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 7259 >seq356 Length=254992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| || | ||||| || |||||| ||||| |||||||| | ||| || || | Sbjct 83968 CGCAGGACGAGATGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCA 84027 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || | ||||||||||||| || | | |||||| Sbjct 84028 TCCTCAAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTA 84087 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| || |||| ||| | | | ||||| ||||| || |||| ||| || Sbjct 84088 TCTTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAAT 84146 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| || || || ||||| Sbjct 84147 CGTCTTGCCGGTAAGGGTCTTGACGAAAATCTGCAT 84182 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| || || ||| || | || || | |||||| |||||||| Sbjct 83764 TCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAG 83823 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||||| || | | |||||||||| ||| || || | | Sbjct 83824 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTA 83883 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || || || || | ||| || || || || || |||||||| || Sbjct 83884 TCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACG 83943 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 83944 AAGATCTGCAT 83954 >seq477 Length=261965 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 42982 GCAATGTG-CTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||||| | || |||| || || ||||| || | || || || | || || |||||| Sbjct 234198 GCAATGAGACTAACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 234257 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || |||||||| || || ||||||||||| | || | || |||||||||| ||| || Sbjct 234258 TTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 234317 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 |||| | | | ||||||| || || || || | || ||||| || ||||| Sbjct 234318 GACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTC 234377 Query 43161 AGCGTCTTTACAAA 43174 || ||||| || || Sbjct 234378 AGGGTCTTCACGAA 234391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810959768120