Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq356 113 3e-20
seq477 98.7 6e-16
seq863 93.3 3e-14
>seq356
Length=254992
Score = 113 bits (124), Expect = 3e-20
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||| ||| | ||| || ||||| |||||||||||||| || ||| ||||
Sbjct 84485 AGAACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 84544
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| ||||||||||| |||||||| ||| ||| | || |||||||||
Sbjct 84545 TCGAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGGATGCCCTCCTTGTCC 84604
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | || | ||||| || ||||| || | ||||||||
Sbjct 84605 TGGATCTTGGACTTCACGTTATCGATGGTATCGGAGGACTCGACCTCGAGAGTGATGGTC 84664
Query 34358 TTGCCGGTGA 34367
||||||||||
Sbjct 84665 TTGCCGGTGA 84674
Score = 95.1 bits (104), Expect = 8e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | || |||| ||| | ||| || ||||| |||||||||||||||
Sbjct 84184 CCACCGCGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 84243
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | |||||||| || || || | ||||||||||| |||
Sbjct 84244 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGG 84303
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || |||||| || ||||| ||| | || | | || | ||| | || |||||
Sbjct 84304 ATGCCCTCCTTATCCTGAATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACC 84363
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
|| | |||||||| ||||| ||||| || || ||
Sbjct 84364 TCGAGGGTGATGGTCTTGCCAGTGAGCGTCTTGAC 84398
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || ||||| || | || ||| ||||| || ||||||||| |
Sbjct 83728 CCGCCACGAAGACGGAGGACCAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGCTC 83787
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
| || | || ||||||||||| || ||||| || || |||||||||||| ||
Sbjct 83788 AAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGG 83847
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | |||| || | || |||||
Sbjct 83848 ATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTATCAATCGTGTCAGATGACTCGACT 83907
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||| || || || || || || || || || |||||||||||
Sbjct 83908 TCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACGAAGATCTGCAT 83954
>seq477
Length=261965
Score = 98.7 bits (108), Expect = 6e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||||| || ||| | || || | ||||||||| ||||| ||
Sbjct 234213 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 234272
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
|| ||||||||||| ||| | || ||||||||| ||||| ||| | || | |
Sbjct 234273 AGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 234332
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|||| |||| || ||||| || | || ||||| || || || || || ||||| ||
Sbjct 234333 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 234391
>seq863
Length=517823
Score = 93.3 bits (102), Expect = 3e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 34229 CGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTC 34288
||| |||| || | |||||| || ||||| || || |||||||||||| ||| | || |
Sbjct 7419 CGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCCC 7360
Query 34289 TCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACC 34348
|||||||| ||||| ||| | || | | || | |||| ||| || || || |
Sbjct 7359 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGG 7300
Query 34349 GTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||| || ||||| || || || || || |||||||||||
Sbjct 7299 GTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 7259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323068342118240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |