Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016- 02-17] 929 sequences; 50,474,234 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq572 111 3e-19 seq121 105 1e-17 >seq572 Length=609512 Score = 111 bits (122), Expect = 3e-19 Identities = 405/625 (65%), Gaps = 17/625 (3%) Strand=Plus/Minus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || |||| ||||| | || || | ||| | | ||| | ||||| || ||||| | | Sbjct 18289 GCCATTGTCTACGACCGCGACTTCAACTACCAATACTTCGGCTTCAAGACCCTGGAAAGA 18230 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || || || ||||| ||||||||||||| | || || ||||||||| | ||||| Sbjct 18229 TCATACCTGCTCAAGCTTGATGGCAAGATTGCCGAGAGACCCCAGCACATGATCATGCGT 18170 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970 || || ||||| || ||| || | ||| |||| ||||||| |||| | ||| Sbjct 18169 GTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTCATCGAGACCTACAACCTCATG 18110 Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027 || | || | || || ||| | || || ||||||||||| |||||| | | Sbjct 18109 TCCAGCAAGTTCT---TCACCCACGCCTCCCCCACACTCTTCAACGCTGGTACC--CCTC 18055 Query 249028 AAT--CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTT 249085 | | |||||| || ||||| || | | |||| | || |||||| | || || || | Sbjct 18054 AGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATCT 17995 Query 249086 ATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144 | ||||| || || || | || | ||| || || | || || || || |||||| | Sbjct 17994 ACGACACCCTCAAGACCTGC-GCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAAC 17936 Query 249145 GTCTC-CAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGG 249203 | ||| | ||||| || | || || || || ||| || || || | | || Sbjct 17935 G-CTCACCGTATCCGTGCCACTGGCTCCTATATTGCAGGCACCAACGGCACCTCGAACGG 17877 Query 249204 TATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG 249263 | || | ||| | ||||| |||| | ||| || | | | || | |||| || Sbjct 17876 TGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACGTCGATCAGGGTGGCAA 17817 Query 249264 C---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTT 249320 | || || | ||||| || || | || ||||||||||| | || ||||| Sbjct 17816 CAAGCGTCCTGGCGCTTTCGCTATCTACCTTGAGCCCTGGCACGCCGACGTCTTCGAGTT 17757 Query 249321 CCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGG 249380 | |||||||| |||||| | ||||| ||| | | || |||||||| ||| || Sbjct 17756 CATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGC 17697 Query 249381 CCTGTGGGTCTCCGACTTGTTCATG 249405 || ||| || |||| |||||||| Sbjct 17696 TCTCTGGATCCCCGATCTGTTCATG 17672 >seq121 Length=229515 Score = 105 bits (116), Expect = 1e-17 Identities = 205/300 (68%), Gaps = 22/300 (7%) Strand=Plus/Plus Query 254100 CGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATC 254159 |||||||||||||| ||||| || ||||| || || | | ||||||| || ||| | Sbjct 4965 CGCGTGCTCGAGCTCAACGCCTCCGACGAGCGTGGAATCTCCATCGTCCGAGAGAAGGTG 5024 Query 254160 AAG-ACTTT-CTC-CA---AGATGTCGATTTCGTCGTTCCAA--------------CCCG 254199 ||| ||||| ||| || || || ||| || || | || ||| Sbjct 5025 AAGGACTTTGCTCGCATGCAGTTGACGAACCCGACGAACGAATACAAGAAGAGATACCCT 5084 Query 254200 GCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGC 254259 || ||||| |||||| | | ||| |||||||||| ||| ||||||| ||||| | Sbjct 5085 --TGCCCGCCATTCAAGATTATCATCTTGGACGAGGCCGACTCCATGACCCAAGACGCAC 5142 Query 254260 AGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGT 254319 || ||| | ||||| || |||||||| || | | ||||| || |||||| | | Sbjct 5143 AGAGTGCCTTGCGCCGCACCATGGAGACATACAGCAAAATCACGCGGTTCTGCCTGATTT 5202 Query 254320 GCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||||||| || ||||||| ||| || ||| ||| ||| ||||||||| |||| Sbjct 5203 GCAACTACGTCACGCGAATCATCGACCCCCTTGCTAGTCGTTGCAGCAAGTTTCGCTTCA 5262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073753619159872