Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq572 111 3e-19
seq121 105 1e-17
>seq572
Length=609512
Score = 111 bits (122), Expect = 3e-19
Identities = 405/625 (65%), Gaps = 17/625 (3%)
Strand=Plus/Minus
Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850
|| |||| ||||| | || || | ||| | | ||| | ||||| || ||||| | |
Sbjct 18289 GCCATTGTCTACGACCGCGACTTCAACTACCAATACTTCGGCTTCAAGACCCTGGAAAGA 18230
Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910
|| || || ||||| ||||||||||||| | || || ||||||||| | |||||
Sbjct 18229 TCATACCTGCTCAAGCTTGATGGCAAGATTGCCGAGAGACCCCAGCACATGATCATGCGT 18170
Query 248911 GTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG 248970
|| || ||||| || ||| || | ||| |||| ||||||| |||| | |||
Sbjct 18169 GTTGCAGTCGGCATCTGGGGTGATAACGTCGAGCGCGTCATCGAGACCTACAACCTCATG 18110
Query 248971 ---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027
|| | || | || || ||| | || || ||||||||||| |||||| | |
Sbjct 18109 TCCAGCAAGTTCT---TCACCCACGCCTCCCCCACACTCTTCAACGCTGGTACC--CCTC 18055
Query 249028 AAT--CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTT 249085
| | |||||| || ||||| || | | |||| | || |||||| | || || || |
Sbjct 18054 AGTGCCAGCTGTCTTCATGCTTCCTCGTCGACATGAAGGAAGACTCTATTGAGGGTATCT 17995
Query 249086 ATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144
| ||||| || || || | || | ||| || || | || || || || |||||| |
Sbjct 17994 ACGACACCCTCAAGACCTGC-GCCATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAAC 17936
Query 249145 GTCTC-CAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGG 249203
| ||| | ||||| || | || || || || ||| || || || | | ||
Sbjct 17935 G-CTCACCGTATCCGTGCCACTGGCTCCTATATTGCAGGCACCAACGGCACCTCGAACGG 17877
Query 249204 TATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCG 249263
| || | ||| | ||||| |||| | ||| || | | | || | |||| ||
Sbjct 17876 TGTCATTCCCATGCTTCGTGTCTTTAACAACACTGCTCGCTACGTCGATCAGGGTGGCAA 17817
Query 249264 C---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTT 249320
| || || | ||||| || || | || ||||||||||| | || |||||
Sbjct 17816 CAAGCGTCCTGGCGCTTTCGCTATCTACCTTGAGCCCTGGCACGCCGACGTCTTCGAGTT 17757
Query 249321 CCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGG 249380
| |||||||| |||||| | ||||| ||| | | || |||||||| ||| ||
Sbjct 17756 CATGGACTTGCGCAAGAACCATGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGC 17697
Query 249381 CCTGTGGGTCTCCGACTTGTTCATG 249405
|| ||| || |||| ||||||||
Sbjct 17696 TCTCTGGATCCCCGATCTGTTCATG 17672
>seq121
Length=229515
Score = 105 bits (116), Expect = 1e-17
Identities = 205/300 (68%), Gaps = 22/300 (7%)
Strand=Plus/Plus
Query 254100 CGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATC 254159
|||||||||||||| ||||| || ||||| || || | | ||||||| || ||| |
Sbjct 4965 CGCGTGCTCGAGCTCAACGCCTCCGACGAGCGTGGAATCTCCATCGTCCGAGAGAAGGTG 5024
Query 254160 AAG-ACTTT-CTC-CA---AGATGTCGATTTCGTCGTTCCAA--------------CCCG 254199
||| ||||| ||| || || || ||| || || | || |||
Sbjct 5025 AAGGACTTTGCTCGCATGCAGTTGACGAACCCGACGAACGAATACAAGAAGAGATACCCT 5084
Query 254200 GCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGC 254259
|| ||||| |||||| | | ||| |||||||||| ||| ||||||| ||||| |
Sbjct 5085 --TGCCCGCCATTCAAGATTATCATCTTGGACGAGGCCGACTCCATGACCCAAGACGCAC 5142
Query 254260 AGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGT 254319
|| ||| | ||||| || |||||||| || | | ||||| || |||||| | |
Sbjct 5143 AGAGTGCCTTGCGCCGCACCATGGAGACATACAGCAAAATCACGCGGTTCTGCCTGATTT 5202
Query 254320 GCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
|||||||||| || ||||||| ||| || ||| ||| ||| ||||||||| ||||
Sbjct 5203 GCAACTACGTCACGCGAATCATCGACCCCCTTGCTAGTCGTTGCAGCAAGTTTCGCTTCA 5262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073753619159872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |