Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20simmondsii_20[genbank_20GCA_5F001563135.1_202016-
02-17] 929 sequences; 50,474,234 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq356 109 4e-19
>seq356
Length=254992
Score = 109 bits (120), Expect = 4e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
||||| || |||||||||||||||||| || ||| |||| | || || || ||
Sbjct 83980 TGCAGAGTTGACTCCTTCTGAATGTTGTAATCCGACAGGGTGCGACCATCCTCAAGCTGC 84039
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
||||||||||| ||||| ||||| ||||||||||| | ||||||||| || || ||
Sbjct 84040 TTTCCGGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATACCCTCCTTATCTTGGATCTTC 84099
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | | |||| | || ||||| | |||||||||||||| ||
Sbjct 84100 GACTTGACGTTGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTAATCGTCTTGCCGGTA 84159
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| || || || |||||
Sbjct 84160 AGGGTCTTGACGAAAATCTGCAT 84182
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
|||||||| || ||||||||| ||| |||| | || |||| || ||||| |||||
Sbjct 83764 TCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCATCTTCCAACTGCTTTCCAGCGAAG 83823
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
|| | ||||| ||||||||||| | ||||||||||||| || || ||| ||
Sbjct 83824 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACGTTA 83883
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | |||| ||| || |||| ||||||||||| || ||||| ||||| ||
Sbjct 83884 TCAATCGTGTCAGATGACTCGACTTCCAACGTAATCGTCTTTCCAGTCAGCGTCTTGACG 83943
Query 45326 AAGATTTGCAT 45336
||||| |||||
Sbjct 83944 AAGATCTGCAT 83954
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| |||||||||||||||||||||| ||| ||| | || ||
Sbjct 84202 ACCAAGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 84261
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
||||| || || || || ||||| ||||| ||||| || || | |||||||| ||| |
Sbjct 84262 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGA 84321
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | || | ||| ||||| | ||| || ||||||
Sbjct 84322 ATCTTCGACTTGACATTGTCGATAGTATCAGAAGACTCGACCTCGAGGGTGATGGTCTTG 84381
Query 45308 CCCGTCAGAGTCTTCAC 45324
|| || || ||||| ||
Sbjct 84382 CCAGTGAGCGTCTTGAC 84398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395070726884509
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |